Publications

2024

Sánchez-Villar, Á., Bai, Z., Bertelli, N., Bethel, E. W., Hillairet, J., Perciano, T., Shiraiwa, S., Wallace, G. M., & Wright, J. (2024). Real-time capable modeling of ICRF heating on NSTX and WEST via machine learning approaches. Nuclear Fusion. https://doi.org/10.1088/1741-4326/ad645d
```
@article{Sanchez:NuclearFusion:2024,
  author = {S\'anchez-Villar, \'Alvaro and Bai, Zhe and Bertelli, Nicola and Bethel, E. Wes and Hillairet, Julien and Perciano, Talita and Shiraiwa, Syun'ichi and Wallace, Greg M and Wright, John},
  title = {Real-time capable modeling of ICRF heating on NSTX and WEST via machine learning approaches},
  journal = {Nuclear Fusion},
  xxx_url = {http://iopscience.iop.org/article/10.1088/1741-4326/ad645d},
  year = {2024},
  month = jul,
  doi = {10.1088/1741-4326/ad645d}
}
```
Balewski, J., Amankwah, M. G., Beeumen, R. V., Bethel, E. W., Perciano, T., & Camps, D. (2024). Quantum-parallel vectorized data encodings and computations on trapped-ions and transmons QPUs. Nature Scientific Reports, 14(1). https://doi.org/10.1038/s41598-024-53720-x
```
@article{Balewski:QCRANK:2024,
  author = {Balewski, Jan and Amankwah, Mercy G. and Beeumen, Roel Van and Bethel, E. Wes and Perciano, Talita and Camps, Daan},
  title = {Quantum-parallel vectorized data encodings and computations on trapped-ions and transmons QPUs},
  journal = {Nature Scientific Reports},
  year = {2024},
  volume = {14},
  number = {1},
  doi = {10.1038/s41598-024-53720-x},
  eprint = {arXiv:2301.07841},
  url = {https://doi.org/10.1038/s41598-024-53720-x}
}
```

Bethel, E. W., Cramer, V., del Rio, A., Narins, L., Pestano, C., Verma, S., Arias, E., Bertelli, N., Perciano, T., Shiraiwa, S., Villar, Á. S., Wallace, G., & Wright, J. C. (2024). Case Study: Leveraging GenAI to Build AI-based Surrogates and Regressors for Modeling Radio Frequency Heating in Fusion Energy Science. Lawrence Berkeley National Laboratory, LBNL-2001609. https://arxiv.org/abs/2409.06122

@techreport{bethel:fusion-genai:2024,
  author = {Bethel, E. Wes and Cramer, Vianna and del Rio, Alexander and Narins, Lothar and Pestano, Chris and Verma, Satvik and Arias, Erick and Bertelli, Nicola and Perciano, Talita and Shiraiwa, Syun'ichi and Villar, \'Alvaro S\'anchez and Wallace, Greg and Wright, John C.},
  title = {{Case Study: Leveraging GenAI to Build AI-based Surrogates and Regressors for Modeling Radio Frequency Heating in Fusion Energy Science}},
  year = {2024},
  month = sep,
  eprint = {arXiv:2409.06122},
  archiveprefix = {arXiv},
  primaryclass = {cs.AI},
  url = {https://arxiv.org/abs/2409.06122},
  institution = {Lawrence Berkeley National Laboratory, LBNL-2001609}
}

2023

Bethel, E. W., Amankwah, M. G., Balewski, J., Beeumen, R. V., Camps, D., Huang, D., & Perciano, T. (2023). Quantum Computing and Visualization: A Disruptive Technological Change Ahead. IEEE Computer Graphics and Applications, 43(6). https://doi.org/10.1109/MCG.2023.3316932

@article{Bethel:CGA_Quantum:2023,
  doi = {10.1109/MCG.2023.3316932},
  month = nov,
  year = {2023},
  title = {{Quantum Computing and Visualization: A Disruptive Technological Change Ahead}},
  author = {Bethel, E. Wes and Amankwah, Mercy G. and Balewski, Jan and Beeumen, Roel Van and Camps, Daan and Huang, Daniel and Perciano, Talita},
  journal = {IEEE Computer Graphics and Applications},
  volume = {43},
  number = {6},
  eprint = {arXiv:2310.04937},
  xx_note = {\url{https://doi.org/10.1109/MCG.2023.3316932}, \url{https://arxiv.org/abs/2310.04937}}
}

Loring, B., Bethel, E. W., Weber, G., & Mahoney, M. W. (2023). Extensions to the SENSEI In situ Framework for Heterogeneous Architectures. Proceedings of the SC ’23 Workshops of The International Conference on High Performance Computing, Network, Storage, and Analysis, 868–874. https://doi.org/10.1145/3624062.3624161

@inproceedings{Loring:ISAV-HAMR:2023,
  author = {Loring, Burlen and Bethel, E. Wes and Weber, Gunther and Mahoney, Michael W.},
  title = {Extensions to the SENSEI In situ Framework for Heterogeneous Architectures},
  year = {2023},
  month = nov,
  isbn = {9798400707858},
  publisher = {Association for Computing Machinery},
  address = {Denver, CO, USA},
  url = {https://doi.org/10.1145/3624062.3624161},
  doi = {10.1145/3624062.3624161},
  eprint = {2310.02926},
  booktitle = {Proceedings of the SC '23 Workshops of The International Conference on High Performance Computing, Network, Storage, and Analysis},
  pages = {868--874},
  numpages = {7},
  keywords = {scientific computing, parallel computing, in situ analytics},
  series = {SC-W '23}
}

Wallace, G. M., Wright, J. C., Arias, E. J., Bethel, E. W., Bai, Z., Perciano, T., Bertellie, N., Sánchez-Villar, Á., & Shiraiwa, S. (2023, October). Predicting Radio Frequency Heating And Current Drive Profiles With Fast Surrogate Models Powered By Machine Learning. 29th IAEA Fusion Energy Conference (FEC 2023). https://www.iaea.org/sites/default/files/23/10/cn-316_fec_preliminary_program.pdf
```
@inproceedings{Wallace:IAEA-FEC:2023,
  author = {Wallace, G. M. and Wright, J. C. and Arias, E. J. and Bethel, E. W. and Bai, Z. and Perciano, T. and Bertellie, N. and S\'anchez-Villar, \'A. and Shiraiwa, S.},
  title = {{Predicting Radio Frequency Heating And Current Drive Profiles With Fast Surrogate Models Powered By Machine Learning}},
  booktitle = {29th IAEA Fusion Energy Conference (FEC 2023)},
  address = {London, UK},
  url = {https://www.iaea.org/sites/default/files/23/10/cn-316_fec_preliminary_program.pdf},
  month = oct,
  year = {2023}
}
```

Kulkarni, S., Loring, B., & Bethel, E. W. (2023, November). Towards a Scalable In Situ Fast Fourier Transform. ISAV 2023: In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization, a SC23 Workshop. https://doi.org/10.48550/arXiv.2402.01843

@inproceedings{Kulkarni:ISAV:2023,
  title = {{Towards a Scalable In Situ Fast Fourier Transform}},
  author = {Kulkarni, Sudhanshu and Loring, Burlen and Bethel, E. Wes},
  year = {2023},
  month = nov,
  booktitle = {ISAV 2023: In Situ Infrastructures for Enabling Extreme-scale Analysis and Visualization, a SC23 Workshop},
  address = {Denver, CO, USA},
  eprint = {arxiv:2402.01843},
  xx_url = {https://arxiv.org/abs/2402.01843},
  doi = {10.48550/arXiv.2402.01843},
  xx_note = {\url{https://arxiv.org/abs/2402.01843}}
}

Sánchez-Villar, Á., Bertelli, N., Shiraiwa, S., Bai, Z., Perciano, T., Hillairet, J., Bethel, E. W., Wallace, G., & Wright, J. C. (2023, November). Development of surrogate models for the TORIC IRCF spectrum solver using ML algorithms. 65th Annual Meeting of the APS Division of Plasma Physics. Abstract: NP11.00048.
```
@inproceedings{Sanchez-Villar:TORIC:APS-DPP:2023,
  title = {{Development of surrogate models for the TORIC IRCF spectrum solver using ML algorithms}},
  author = {S\'anchez-Villar, \'A. and Bertelli, N. and Shiraiwa, S. and Bai, Z. and Perciano, T. and Hillairet, J. and Bethel, E. W. and Wallace, G. and Wright, J. C.},
  booktitle = {65th Annual Meeting of the APS Division of Plasma Physics},
  address = {Denver, CO, USA},
  year = {2023},
  month = nov,
  note = {Abstract: NP11.00048}
}
```
Sánchez-Villar, Á., Bai, Z., Bertelli, N., Bethel, E. W., Hillairet, J., Perciano, T., Shiraiwa, S., Wallace, G., & Wright, J. C. (2023, November). Methodology for surrogate modeling implementation: application to the ICRF wave absorption forward problem. 65th Annual Meeting of the APS Division of Plasma Physics. Abstract: BO05.00015.
```
@inproceedings{Sanchez-Villar:ICRF:APS-DPP:2023,
  title = {{Methodology for surrogate modeling implementation: application to the ICRF wave absorption forward problem}},
  author = {S\'anchez-Villar, \'A. and Bai, Z. and Bertelli, N. and Bethel, E. W. and Hillairet, J. and Perciano, T. and Shiraiwa, S. and Wallace, G. and Wright, J. C.},
  booktitle = {65th Annual Meeting of the APS Division of Plasma Physics},
  year = {2023},
  month = nov,
  address = {Denver, CO, USA},
  note = {Abstract: BO05.00015}
}
```

2022

Wallace, G. M., Bai, Z., Sadre, R., Perciano, T., Bertelli, N., Shiraiwa, S., Bethel, E. W., & Wright, J. C. (2022). Towards fast and accurate predictions of radio frequency power deposition and current profile via data-driven modelling: applications to lower hybrid current drive. Journal of Plasma Physics, 88(4), 895880401. https://doi.org/10.1017/S0022377822000708

@article{Wallace:FusionML:2022,
  title = {Towards fast and accurate predictions of radio frequency power deposition and current profile via data-driven modelling: applications to lower hybrid current drive},
  volume = {88},
  doi = {10.1017/S0022377822000708},
  number = {4},
  journal = {Journal of Plasma Physics},
  publisher = {Cambridge University Press},
  author = {Wallace, G.M. and Bai, Z. and Sadre, R. and Perciano, T. and Bertelli, N. and Shiraiwa, S. and Bethel, E.W. and Wright, J.C.},
  year = {2022},
  month = aug,
  pages = {895880401},
  xx_note = {\url{https://www.doi.org/10.1017/S0022377822000708}}
}

Amankwah, M., Camps, D., Bethel, E. W., Beeumen, R. V., & Perciano, T. (2022). Quantum pixel representations and compression for N-dimensional images. Nature Scientific Reports. https://doi.org/10.1038/s41598-022-11024-y
```
@article{QPIXL:2022,
  author = {Amankwah, Mercy and Camps, Daan and Bethel, E. Wes and Beeumen, Roel Van and Perciano, Talita},
  title = {{Quantum pixel representations and compression for $N$-dimensional images}},
  journal = {{Nature Scientific Reports}},
  doi = {10.1038/s41598-022-11024-y},
  xx_note = {\url{https://doi.org/10.1038/s41598-022-11024-y}},
  year = {2022},
  month = may
}
```

Zhang, S., Sadre, R., Legg, B. A., Pyles, H., Perciano, T., Bethel, E. W., Baker, D., Rübel, O., & Yoreo, J. J. D. (2022). Rotational dynamics and transition mechanisms of surface-adsorbed proteins. Proceedings of the National Academy of Sciences, 119(16), e2020242119. https://doi.org/10.1073/pnas.2020242119

@article{Zhang:PNAS:2022,
  author = {Zhang, Shuai and Sadre, Robbie and Legg, Benjamin A. and Pyles, Harley and Perciano, Talita and Bethel, E. Wes and Baker, David and R\"ubel, Oliver and Yoreo, James J. De},
  title = {Rotational dynamics and transition mechanisms of surface-adsorbed proteins},
  journal = {Proceedings of the National Academy of Sciences},
  volume = {119},
  number = {16},
  pages = {e2020242119},
  year = {2022},
  month = apr,
  doi = {10.1073/pnas.2020242119},
  xx_url = {https://www.pnas.org/doi/abs/10.1073/pnas.2020242119},
  xx_eprint = {https://www.pnas.org/doi/pdf/10.1073/pnas.2020242119},
  xx_note = {\url{https://www.pnas.org/doi/abs/10.1073/pnas.2020242119}}
}

Wallace, G., Bai, Z., Bertelli, N., Bethel, E. W., Perciano, T., Sadre, R., Shiraiwa, S., & Wright, J. C. (2022, September). Overview and status of the FES Scientific Machine Learning Project "Accelerating Radio Frequency Modeling Using Machine Learning". Proceedings of the 24th Topical Conference on Radio-Frequency Power in Plasmas (TCRFPP).
```
@inproceedings{Wallace:TCRFPP:2022,
  title = {{Overview and status of the FES Scientific Machine Learning Project "Accelerating Radio Frequency Modeling Using Machine Learning"}},
  author = {Wallace, Greg and Bai, Zhe and Bertelli, Nicola and Bethel, E. Wes and Perciano, Talita and Sadre, Robbie and Shiraiwa, Syun'ichi and Wright, John C.},
  booktitle = {Proceedings of the 24th Topical Conference on Radio-frequency Power in Plasmas (TCRFPP)},
  month = sep,
  year = {2022},
  address = {Annapolis, MD, USA}
}
```

Bethel, E. W., Loring, B., Ayatchit, U., Camp, D., Duque, E. P. N., Ferrier, N., Insley, J., Gu, J., Kress, J., O’Leary, P., Pugmire, D., Rizzi, S., Thompson, D., Weber, G. H., Whitlock, B., Wolf, M., & Wu, K. (2022). The SENSEI Generic In Situ Interface: Tool and Processing Portability at Scale. In H. Childs, J. Bennett, & C. Garth (Eds.), In Situ Visualization for Computational Science. Springer. https://doi.org/10.1007/978-3-030-81627-8_13

@incollection{Bethel:SENSEI-Chapter:ISVFCS:2021,
  title = {{The SENSEI Generic In Situ Interface: Tool and Processing
  Portability at Scale}},
  author = {Bethel, E. Wes and Loring, Burlen and Ayatchit, Utkarsh and Camp, David and Duque, Earl P. N. and Ferrier, Nicola and Insley, Joseph and Gu, Junmin and Kress, James and O'Leary, Patrick and Pugmire, David and Rizzi, Silvio and Thompson, David and Weber, Gunther H. and Whitlock, Brad and Wolf, Matthew and Wu, Kesheng},
  booktitle = {{In Situ Visualization for Computational Science}},
  editor = {Childs, Hank and Bennett, Janine and Garth, Christoph},
  publisher = {Springer},
  year = {2022},
  xx_doi = {10.1007/978-3-030-81627-8},
  doi = {10.1007/978-3-030-81627-8_13},
  xx_note = {\url{https://doi.org/10.1007/978-3-030-81627-8}},
  isbn = {978-3-030-81627-8}
}

Bethel, E. W., Loring, B., Ayatchit, U., Camp, D., Duque, E. P. N., Ferrier, N., Insley, J., Gu, J., Kress, J., O’Leary, P., Pugmire, D., Rizzi, S., Thompson, D., Weber, G., Whitlock, B., Wolf, M., & Wu, K. (2022). Proximity Portability and In Transit, M-to-N Data Partitioning and Movement in SENSEI. In H. Childs, J. Bennett, & C. Garth (Eds.), In Situ Visualization for Computational Science. Springer. https://doi.org/10.1007/978-3-030-81627-8_20

@incollection{Bethel:MxN-Chapter:ISVFCS:2021,
  title = {{Proximity Portability and In Transit, M-to-N Data
  Partitioning and Movement in SENSEI}},
  author = {Bethel, E. Wes and Loring, Burlen and Ayatchit, Utkarsh and Camp, David and Duque, Earl P. N. and Ferrier, Nicola and Insley, Joseph and Gu, Junmin and Kress, James and O'Leary, Patrick and Pugmire, David and Rizzi, Silvio and Thompson, David and Weber, Gunther and Whitlock, Brad and Wolf, Matthew and Wu, Kesheng},
  booktitle = {{In Situ Visualization for Computational Science}},
  editor = {Childs, Hank and Bennett, Janine and Garth, Christoph},
  publisher = {Springer},
  year = {2022},
  doi = {10.1007/978-3-030-81627-8_20},
  xx_doi = {10.1007/978-3-030-81627-8},
  xx_note = {\url{https://doi.org/10.1007/978-3-030-81627-8}},
  isbn = {978-3-030-81627-8}
}

2021

Bethel, E. W., Heinemann, C., & Perciano, T. (2021). Performance Tradeoffs in Shared-memory Platform Portable Implementations of a Stencil Kernel. In M. Larsen & F. Sadlo (Eds.), Eurographics Symposium on Parallel Graphics and Visualization. The Eurographics Association. https://doi.org/10.2312/pgv.20211043 \urlhttps://escholarship.org/uc/item/22q2t9cg.

@inproceedings{Bethel:egpgv-kernel:2021,
  booktitle = {Eurographics Symposium on Parallel Graphics and Visualization},
  editor = {Larsen, Matthew and Sadlo, Filip},
  title = {{Performance Tradeoffs in Shared-memory Platform Portable Implementations of a Stencil Kernel}},
  author = {Bethel, E. Wes and Heinemann, Colleen and Perciano, Talita},
  year = {2021},
  publisher = {The Eurographics Association},
  issn = {1727-348X},
  isbn = {978-3-03868-138-0},
  doi = {10.2312/pgv.20211043},
  month = jun,
  address = {Z\"urich, Switzerland},
  note = {\url{https://escholarship.org/uc/item/22q2t9cg}},
  escholarshipurl = {https://escholarship.org/uc/item/22q2t9cg}
}

Wright, J., Wallace, G., Bethel, E. W., Bai, Z., Perciano, T., Sadre, R., Bertelli, N., & Shiraiwa, S. (2021). Overview and status of the FES Scientific Machine Learning Project "Accelerating Radio Frequency Modeling Using Machine Learning". Proceedings of the 63rd Annual Meeting of the APS Division of Plasma Physics, 66. TM10.00002.
```
@inproceedings{Wright:APS:2021,
  title = {{Overview and status of the FES Scientific Machine Learning Project "Accelerating Radio Frequency Modeling Using Machine Learning"}},
  author = {Wright, John and Wallace, Greg and Bethel, E. Wes and Bai, Zhe and Perciano, Talita and Sadre, Robbie and Bertelli, Nicola and Shiraiwa, Syun'ichi},
  booktitle = {Proceedings of the 63rd Annual Meeting of the APS Division of Plasma Physics},
  volume = {66},
  month = nov,
  year = {2021},
  address = {Pittsburgh, PA, USA},
  note = {TM10.00002}
}
```
Loring, B., Marsaglia, N. J., & Bethel, E. W. (2021, June). The SENSEI Generic In Situ Interface’s Use of Ascent as an Endpoint. ISC Digital, Proceedings of the 5th Workshop on In Situ Visualization. https://doi.org/10.5281/zenodo.5795233
```
@inproceedings{Bethel:SENSEI-Ascent-WoIV:2021,
  author = {Loring, Burlen and Marsaglia, Nicole J. and Bethel, E. Wes},
  title = {{The SENSEI Generic In Situ Interface's Use of Ascent as an Endpoint}},
  booktitle = {ISC Digital, Proceedings of the 5th Workshop on In Situ Visualization},
  address = {Frankfurt, Germany},
  doi = {10.5281/zenodo.5795233},
  month = jun,
  year = {2021}
}
```

2020

Peterka, T., Bard, D., Bennett, J. C., Bethel, E. W., Oldfield, R. A., Pouchard, L., Sweeney, C., & Wolf, M. (2020). Priority research directions for in situ data management: Enabling scientific discovery from diverse data sources. The International Journal of High Performance Computing Applications. https://doi.org/10.1177/1094342020913628

@article{ISDM-Peterka-IJHPCA:2020,
  author = {Peterka, Tom and Bard, Deborah and Bennett, Janine C and Bethel, E Wes and Oldfield, Ron A and Pouchard, Line and Sweeney, Christine and Wolf, Matthew},
  title = {Priority research directions for in situ data management: Enabling scientific discovery from diverse data sources},
  journal = {The International Journal of High Performance Computing Applications},
  year = {2020},
  month = mar,
  doi = {10.1177/1094342020913628},
  xx_url = {https://doi.org/10.1177/1094342020913628},
  xx_eprint = {https://doi.org/10.1177/1094342020913628},
  xx_note = {\url{https://doi.org/10.1177/1094342020913628}}
}

Childs, H., Ahern, S., Ahrens, J., Bauer, A. C., Bennett, J., Bethel, E. W., Bremer, P.-T., Brugger, E., Cottam, J., Dorier, M., Dutta, S., Favre, J., Fogal, T., Frey, S., Garth, C., Geveci, B., Godoy, W. F., Hansen, C. D., Harrison, C., … Ziegler, S. B. (2020). A Terminology for In Situ Visualization and Analysis Systems. International Journal of High Performance Computing Applications, 0(0). https://doi.org/10.1177/1094342020935991

@article{Childs:ISTP:2020,
  author = {Childs, H. and Ahern, S. and Ahrens, J. and Bauer, A. C. and Bennett, J. and Bethel, E. W. and Bremer, P.-T. and Brugger, E. and Cottam, J. and Dorier, M. and Dutta, S. and Favre, J. and Fogal, T. and Frey, S. and Garth, C. and Geveci, B. and Godoy, W. F. and Hansen, C. D. and Harrison, C. and Hentschel, B. and Insley, J. and Johnson, C. and Klasky, S. and Knoll, A. and Kress, J. and Larsen, M. and Lofstead, J. and Ma, K.-L. and Malakar, P. and Meredith, J. and Moreland, K. and Navratil, P. and O'Leary, P. and Parashar, M. and Pascucci, V. and Patchett, J. and Peterka, T. and Petruzza, S. and Podhorszki, N. and Pugmire, D. and Rasquin, M. and Rizzi, S. and Rogers, D. H. and Sane, S. and Sauer, F. and Sisneros, R. and Shen, H.-W. and Usher, W. and Vickery, R. and Vishwanath, V. and Wald, I. and Wang, R. and Weberr, G. H. and Whitlock, B. and Wolf, M. and Yu, H. and Ziegler, S. B.},
  title = {{A Terminology for In Situ Visualization and Analysis Systems}},
  journal = {International Journal of High Performance Computing Applications},
  year = {2020},
  month = aug,
  volume = {0},
  number = {0},
  doi = {10.1177/1094342020935991},
  xx_url = {https://doi.org/10.1177/1094342020935991},
  xx_eprint = { https://doi.org/10.1177/1094342020935991 },
  xx_note = { \url{https://doi.org/10.1177/1094342020935991} }
}

Perciano, T., Heinemann, C., Camp, D., Lessley, B., & Bethel, E. W. (2020, June). Shared-memory Parallel Probabilistic Graphical Modeling Optimization: Comparison of Threads, OpenMP, and Data-Parallel Primitives. Proceedings of ISC High Performance 2020. https://doi.org/10.1007/978-3-030-50743-5_7
```
@inproceedings{Perciano:PMRF-Compare:2020,
  author = {Perciano, T. and Heinemann, C. and Camp, D. and Lessley, B. and Bethel, E. W.},
  title = {{Shared-memory Parallel Probabilistic Graphical Modeling Optimization: Comparison of Threads, OpenMP, and Data-Parallel Primitives}},
  booktitle = {Proceedings of ISC High Performance 2020},
  month = jun,
  year = {2020},
  doi = {10.1007/978-3-030-50743-5_7},
  address = {Frankfurt, Germany}
}
```

Loring, B., Wolf, M., Kress, J., Shudler, S., Gu, J., Rizzi, S., Logan, J., Ferrier, N., & Bethel, E. W. (2020). Improving Performance of M-to-N Processing and Data Redistribution in In Transit Analysis and Visualization. In S. Frey, J. Huang, & F. Sadlo (Eds.), Eurographics Symposium on Parallel Graphics and Visualization (EGPGV). The Eurographics Association. https://doi.org/10.2312/pgv.20201073 \urlhttps://escholarship.org/uc/item/9cn390hq.

@inproceedings{Loring:MxN-EGPGV:2020,
  booktitle = {Eurographics Symposium on Parallel Graphics and Visualization (EGPGV)},
  editor = {Frey, Steffen and Huang, Jian and Sadlo, Filip},
  title = {{Improving Performance of M-to-N Processing and Data Redistribution in In Transit Analysis and Visualization}},
  author = {Loring, Burlen and Wolf, Mathew and Kress, James and Shudler, Sergei and Gu, Junmin and Rizzi, Silvio and Logan, Jeremy and Ferrier, Nicola and Bethel, E. Wes},
  month = may,
  year = {2020},
  publisher = {The Eurographics Association},
  issn = {1727-348X},
  isbn = {978-3-03868-107-6},
  doi = {10.2312/pgv.20201073},
  address = {Norrk\"{o}ping, Sweden},
  note = {\url{https://escholarship.org/uc/item/9cn390hq}},
  escholarshipurl = {https://escholarship.org/uc/item/9cn390hq}
}

Bethel, E. W., Camp, D., Perciano, T., & Heinemann, C. (2020). Performance Analysis of Traditional and Data-Parallel Primitive Implementations of Visualization and Analysis Kernels (LBNL-2001365; Number LBNL-2001365). Lawrence Berkeley National Laboratory. https://arxiv.org/abs/2010.02361 \urlhttps://arxiv.org/abs/2010.02361.

@techreport{Bethel:KernelsAnalysis:arXiv:2020,
  title = {Performance Analysis of Traditional and Data-Parallel Primitive Implementations of Visualization and Analysis Kernels},
  author = {Bethel, E. Wes and Camp, David and Perciano, Talita and Heinemann, Colleen},
  month = oct,
  number = {LBNL-2001365},
  year = {2020},
  eprint = {https://arxiv.org/abs/2010.02361},
  archiveprefix = {arXiv},
  primaryclass = {cs.DC},
  institution = {Lawrence Berkeley National Laboratory},
  address = {Berkeley, CA, USA, 94720},
  url = {https://arxiv.org/abs/2010.02361},
  note = {\url{https://arxiv.org/abs/2010.02361}},
  escholarshipurl = {https://escholarship.org/uc/item/3v87w9mt}
}

2019

Gu, J., Loring, B., Wu, K., & Bethel, E. W. (2019). HDF5 As a Vehicle for in Transit Data Movement. Proceedings of the Workshop on In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization, 39–43. https://doi.org/10.1145/3364228.3364237

@inproceedings{Gu:2019:HVT:3364228.3364237,
  author = {Gu, Junmin and Loring, Burlen and Wu, Kesheng and Bethel, E. Wes},
  title = {HDF5 As a Vehicle for in Transit Data Movement},
  booktitle = {Proceedings of the Workshop on In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization},
  series = {ISAV '19},
  year = {2019},
  isbn = {978-1-4503-7723-2},
  location = {Denver, Colorado},
  pages = {39--43},
  numpages = {5},
  xx_url = {http://doi.acm.org/10.1145/3364228.3364237},
  doi = {10.1145/3364228.3364237},
  acmid = {3364237},
  publisher = {ACM},
  address = {New York, NY, USA},
  keywords = {in situ analysis, in situ visualization, SENSEI}
}

2018

Loring, B., Myers, A., Camp, D., & Bethel, E. W. (2018). Python-based in situ analysis and visualization. Proceedings of the Workshop on In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization - ISAV ’18. https://doi.org/10.1145/3281464.3281465 Best Paper Award Finalist.

@inproceedings{Loring:Python-InSitu:ISAV:2018,
  author = {Loring, Burlen and Myers, Andrew and Camp, David and Bethel, E. Wes},
  booktitle = {Proceedings of the Workshop on In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization  - ISAV '18},
  publisher = {ACM Press},
  title = {Python-based in situ analysis and visualization},
  year = {2018},
  doi = {10.1145/3281464.3281465},
  startyear = {2018},
  startmonth = {Nov},
  startday = {11},
  finishyear = {2018},
  finishmonth = {Nov},
  finishday = {11},
  isbn = {9781450365796},
  conference = {the Workshop},
  publicationstatus = {published},
  note = {Best Paper Award Finalist}
}

Lessley, B., Perciano, T., Hienemann, C., Camp, D., Childs, H., & Bethel, E. W. (2018, October). DPP-PMRF: Rethinking Optimization for a Probabilistic Graphical Model Using Data-Parallel Primitives. 8th IEEE Symposium on Large Data Analysis and Visualization (LDAV). https://doi.org/10.1109/LDAV.2018.8739239
```
@inproceedings{Lessley:DPP-PMRF:2018,
  author = {Lessley, Brenton and Perciano, Talita and Hienemann, Colleen and Camp, David and Childs, Hank and Bethel, E. Wes},
  title = {{DPP-PMRF: Rethinking Optimization for a Probabilistic Graphical Model Using Data-Parallel Primitives}},
  booktitle = {8th IEEE Symposium on Large Data Analysis and Visualization (LDAV)},
  month = oct,
  year = {2018},
  doi = {10.1109/LDAV.2018.8739239},
  eprint = {1809.05018v1},
  address = {Berlin, Germany}
}
```

2017

Perciano, T., Ushizima, D., Krishnan, H., Parkinson, D., Larson, N., Pelt, D. M., Bethel, W., Zok, F., & Sethian, J. (2017). Insight into 3D micro-CT data: exploring segmentation algorithms through performance metrics. Journal of Synchrotron Radiation, 24(5), 1065–1077. https://doi.org/10.1107/S1600577517010955

@article{Perciano:pp5100,
  author = {Perciano, Talita and Ushizima, Daniela and Krishnan, Harinarayan and Parkinson, Dilworth and Larson, Natalie and Pelt, Dani{\"{e}}l M. and Bethel, Wes and Zok, Frank and Sethian, James},
  title = {{Insight into 3D micro-CT data: exploring segmentation algorithms through performance metrics}},
  journal = {Journal of Synchrotron Radiation},
  year = {2017},
  volume = {24},
  number = {5},
  pages = {1065--1077},
  month = sep,
  doi = {10.1107/S1600577517010955},
  xx_url = {https://doi.org/10.1107/S1600577517010955},
  keywords = {unsupervised segmentation, micro-tomography, ceramic matrix composites, image analysis}
}

Heinemann, C., Perciano, T., Ushizima, D., & Bethel, E. W. (2017, December). Distributed Memory Parallel Markov Random Fields using Graph Partitioning. Fourth International Workshop on High Performance Big Graph Data Management, Analysis, and Mining (BigGraphs 2017), in Conjunction with IEEE BigData 2017. https://doi.org/10.1109/BigData.2017.8258318
```
@inproceedings{Heinemann:MPI-PMRF:2017,
  author = {Heinemann, Colleen and Perciano, Talita and Ushizima, Daniela and Bethel, E. Wes},
  title = {{Distributed Memory Parallel Markov Random Fields using Graph Partitioning}},
  booktitle = {Fourth International Workshop on High Performance Big Graph Data Management, Analysis, and Mining (BigGraphs 2017), in conjunction with IEEE BigData 2017},
  doi = {10.1109/BigData.2017.8258318},
  month = dec,
  year = {2017}
}
```
Lessley, B., Perciano, T., Mathai, M., Childs, H., & Bethel, E. W. (2017, October). Maximal Clique Enumeration with Data Parallel Primitives. 7th IEEE Symposium on Large Data Analysis and Visualization (LDAV). https://doi.org/10.1109/LDAV.2017.8231847
```
@inproceedings{Lessley:MCE-DPP:LDAV:2017,
  author = {Lessley, Brenton and Perciano, Talita and Mathai, Manish and Childs, Hank and Bethel, E. Wes},
  title = {{Maximal Clique Enumeration with Data Parallel Primitives}},
  booktitle = {7th IEEE Symposium on Large Data Analysis and Visualization (LDAV)},
  month = oct,
  year = {2017},
  address = {Phoenix, AZ, USA},
  doi = {10.1109/LDAV.2017.8231847}
}
```
Bethel, E. W. (2017, October). Towards a Data-Centric Research and Development Roadmap for Large-scale Science User Facilities. 13th IEEE International Conference on EScience. https://doi.org/10.1109/eScience.2017.72 \urlhttps://doi.org/10.1109/eScience.2017.72.
```
@inproceedings{Bethel:dataRoadmap-eScience:2017,
  author = {Bethel, E. Wes},
  title = {{Towards a Data-Centric Research and Development Roadmap for Large-scale Science User Facilities}},
  booktitle = {{13th IEEE International Conference on eScience}},
  month = oct,
  year = {2017},
  doi = {10.1109/eScience.2017.72},
  note = {\url{https://doi.org/10.1109/eScience.2017.72}},
  address = {Auckland, NZ}
}
```
Bethel, E. W., Camp, D., Childs, H., Krishnan, H., Loring, B., Morozov, D., Rübel, O., Perciano, T., Ushizima, D., & Weber, G. (2017, March). Towards Exascale: High Performance Visualization and Analytics. U. S. Department of Energy, Office of Advanced Scientific Computing Research Computer Science Principle Investigators Meeting: Resilience, SSIO, Design Space, and Scientific Data Management, Analysis, and Visualization (SMDAV).
```
@inproceedings{Bethel:LBNL-Base-SMDAV:2017,
  author = {Bethel, E. Wes and Camp, David and Childs, Hank and Krishnan, Hari and Loring, Burlen and Morozov, Dmitriy and R\"ubel, Oliver and Perciano, Talita and Ushizima, Daniela and Weber, Gunther},
  title = {{Towards Exascale: High Performance Visualization and Analytics}},
  booktitle = {U. S. Department of Energy, Office of Advanced Scientific Computing Research Computer Science Principle Investigators Meeting: Resilience, SSIO, Design Space, and Scientific Data Management, Analysis, and Visualization (SMDAV)},
  month = mar,
  year = {2017},
  address = {Bethesda, MD, USA}
}
```
Bethel, E. W., Loring, B., Morozov, D., Sim, A., Weber, G. H., Ferrier, N., Vishwanath, V., Schwaan, K., Wolf, M., Duque, E., Whitlock, B., Ayachit, U., & O’Leary, P. (2017, March). Scalable Analysis Methods and In Situ Infrastructure for Extreme Scale Knowledge Discovery. U. S. Department of Energy, Office of Advanced Scientific Computing Research Computer Science Principle Investigators Meeting: Resilience, SSIO, Design Space, and Scientific Data Management, Analysis, and Visualization (SMDAV).
```
@inproceedings{Bethel:SENSEI-SMDAV:2017,
  author = {Bethel, E. Wes and Loring, Burlen and Morozov, Dmitriy and Sim, Alex and Weber, Gunther H. and Ferrier, Nicola and Vishwanath, Venkat and Schwaan, Karsten and Wolf, Matt and Duque, Earl and Whitlock, Brad and Ayachit, Utkarsh and O'Leary, Patrick},
  title = {{Scalable Analysis Methods and In Situ Infrastructure for Extreme Scale Knowledge Discovery}},
  booktitle = {U. S. Department of Energy, Office of Advanced Scientific Computing Research Computer Science Principle Investigators Meeting: Resilience, SSIO, Design Space, and Scientific Data Management, Analysis, and Visualization (SMDAV)},
  month = mar,
  year = {2017},
  address = {Bethesda, MD, USA}
}
```

2016

Ushizima, D. M., Bale, H. A., Bethel, E. W., Ercius, P., Helms, B. A., Krishnan, H., Grinberg, L. T., Haranczyk, M., Macdowell, A. A., Odziomek, K., Parkinson, D. Y., Perciano, T., Ritchie, R. O., & Yang, C. (2016). IDEAL: Images Across Domains, Experiments, Algorithms and Learning. Journal Of Materials, 1–10. https://doi.org/10.1007/s11837-016-2098-4

@article{Ushizima:IDEAS:2016,
  author = {Ushizima, Daniela M. and Bale, Hrishikesh A. and Bethel, E. Wes and Ercius, Peter and Helms, Brett A. and Krishnan, Harinarayan and Grinberg, Lea T. and Haranczyk, Maciej and Macdowell, Alastair A. and Odziomek, Katarzyna and Parkinson, Dilworth Y. and Perciano, Talita and Ritchie, Robert O. and Yang, Chao},
  title = {{IDEAL: Images Across Domains, Experiments, Algorithms and Learning}},
  journal = {Journal Of Materials},
  month = sep,
  year = {2016},
  pages = {1--10},
  issn = {1543-1851},
  doi = {10.1007/s11837-016-2098-4},
  url = {http://dx.doi.org/10.1007/s11837-016-2098-4}
}

Bauer, A. C., Abbasi, H., Ahrens, J., Childs, H., Geveci, B., Klasky, S., Moreland, K., O’Leary, P., Vishwanath, V., Whitlock, B., & Bethel, E. W. (2016). In Situ Methods, Infrastructures, and Applications on High Performance Computing Platforms, a State-of-the-art (STAR) Report. Computer Graphics Forum, Proceedings of Eurovis 2016, 35(3). https://doi.org/10.1111/cgf.12930

@article{Baer:InSitu-STAR:2016,
  author = {Bauer, Andrew C. and Abbasi, Hasan and Ahrens, James and Childs, Hank and Geveci, Berk and Klasky, Scott and Moreland, Kenneth and O'Leary, Patrick and Vishwanath, Venkatram and Whitlock, Brad and Bethel, E. Wes},
  title = {{\textit{In Situ} Methods, Infrastructures, and Applications on High Performance Computing Platforms, a State-of-the-art (STAR) Report}},
  journal = {Computer Graphics Forum, Proceedings of Eurovis 2016},
  publisher = {Wiley-Blackwell},
  address = {Gr\"oningen, Netherlands},
  month = jun,
  year = {2016},
  volume = {35},
  number = {3},
  doi = {10.1111/cgf.12930},
  ignorenote = {LBNL-1005709}
}

Rübel, O., Loring, B., Vay, J. L., Grote, D. P., Lehe, R., Bulanov, S., Vincenti, H., & Bethel, E. W. (2016). WarpIV: In Situ Visualization and Analysis of Ion Accelerator Simulations. IEEE Computer Graphics and Applications, 36(3), 22–35. https://doi.org/10.1109/MCG.2016.62

@article{Ruebel:WarpVisIt:2016,
  author = {R\"ubel, O. and Loring, B. and Vay, J. L. and Grote, D. P. and Lehe, R. and Bulanov, S. and Vincenti, H. and Bethel, E. W.},
  journal = {IEEE Computer Graphics and Applications},
  title = {{WarpIV: In Situ Visualization and Analysis of Ion Accelerator Simulations}},
  year = {2016},
  volume = {36},
  number = {3},
  pages = {22-35},
  keywords = {data analysis;data visualisation;digital simulation;ion accelerators;plasma sheaths;2D ion accelerator simulations;3D ion accelerator simulations;Warp In situ Visualization Toolkit;Warp simulation suite;WarpIV;feature-based data analytics;hadron therapy;high-fidelity particle accelerator simulations;ion beam short pulse generation;ion sources;large-scale data analysis;plasma sheath;query-based data analytics;radiography;time distributed parallel in situ visualization;Acceleration;Analytical models;Computational modeling;Data models;Data visualization;Ion accelerators;Object oriented modeling;computer graphics;data analysis;data visualization;in situ visualization;ion beams;nuclear sciences;particle beams;particle rendering;plasma sciences},
  url = {http://dx.doi.org/10.1109/MCG.2016.62},
  doi = {10.1109/MCG.2016.62},
  issn = {0272-1716},
  month = may,
  ignorenote = {LBNL-1005719}
}

Bethel, E. W., Greenwald, M., van Dam, K. K., Parashar, M., Wild, S. M., & Wiley, H. S. (2016, October). Management, Analysis, and Visualization of Experimental and Observational Data – The Convergence of Data and Computing. Proceedings of the 2016 IEEE 12th International Conference on EScience. https://doi.org/10.1109/eScience.2016.7870902

@inproceedings{Bethel:eScience:2016,
  author = {Bethel, E. Wes and Greenwald, Martin and van Dam, Kerstin Kleese and Parashar, Manish and Wild, Stefan M. and Wiley, H. Steven},
  title = {{Management, Analysis, and Visualization of Experimental and Observational Data -- The Convergence of Data and Computing}},
  booktitle = {Proceedings of the 2016 IEEE 12th International Conference on eScience},
  month = oct,
  year = {2016},
  doi = {10.1109/eScience.2016.7870902},
  xx_url = {https://doi.org/10.1109/eScience.2016.7870902},
  xx_note = {\url{https://doi.org/10.1109/eScience.2016.7870902}},
  address = {Baltimore, MD, USA},
  ignorenote = {LBNL-1006061}
}

Ayachit, U., Bauer, A., Duque, E. P. N., Eisenhauer, G., Ferrier, N., Gu, J., Jansen, K., Loring, B., Lukić, Z., Menon, S., Morozov, D., O’Leary, P., Rasquin, M., Stone, C. P., Vishwanath, V., Weber, G. H., Whitlock, B., Wolf, M., Wu, K. J., & Bethel, E. W. (2016, November). Performance Analysis, Design Considerations, and Applications of Extreme-scale In Situ Infrastructures. ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis (SC16). https://doi.org/10.1109/SC.2016.78

@inproceedings{Ayachit:SENSEI-SC16:2016,
  author = {Ayachit, Utkarsh and Bauer, Andrew and Duque, Earl P. N. and Eisenhauer, Greg and Ferrier, Nicola and Gu, Junmin and Jansen, Kenneth and Loring, Burlen and Luki{\'c}, Zarija and Menon, Suresh and Morozov, Dmitriy and O'Leary, Patrick and Rasquin, Michel and Stone, Christopher P. and Vishwanath, Venkat and Weber, Gunther H. and Whitlock, Brad and Wolf, Matthew and Wu, K. John and Bethel, E. Wes},
  title = {{Performance Analysis, Design Considerations, and Applications of Extreme-scale \textit{In Situ} Infrastructures}},
  booktitle = {ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis (SC16)},
  month = nov,
  year = {2016},
  address = {Salt Lake City, UT, USA},
  ignorenote = {LBNL-1007264},
  xx_doi = {10.5555/3014904.3015010},
  doi = {10.1109/SC.2016.78},
  xx_url = {https://dl.acm.org/doi/10.5555/3018859.3018867}
}

Ayachit, U., Whitlock, B., Wolf, M., Loring, B., Geveci, B., Lonie, D., & Bethel, E. W. (2016, November). The SENSEI Generic In Situ Interface. Proceedings of In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization (ISAV 2016). https://doi.org/10.1109/ISAV.2016.013
```
@inproceedings{Ayachit:SENSEI-interface:2016,
  author = {Ayachit, Utkarsh and Whitlock, Brad and Wolf, Matthew and Loring, Burlen and Geveci, Berk and Lonie, David and Bethel, E. Wes},
  title = {{The SENSEI Generic In Situ Interface}},
  booktitle = {Proceedings of In Situ Infrastructures for Enabling Extreme-scale Analysis and Visualization (ISAV 2016)},
  month = nov,
  year = {2016},
  address = {Salt Lake City, UT, USA},
  ignorenote = {LBNL-1007263},
  doi = {10.1109/ISAV.2016.013}
}
```
Perciano, T., Ushizima, D., Bethel, E. W., Mizrahi, Y., & Sethian, J. (2016, September). Reduced-complexity Image Segmentation Under Parallel Markov Random Field Formulation Using Graph Partitioning. IEEE International Conference on Image Processing (ICIP). https://doi.org/10.1109/ICIP.2016.7532560
```
@inproceedings{Perciano:PMRF:2016,
  author = {Perciano, Talita and Ushizima, Daniela and Bethel, E. Wes and Mizrahi, Yariv and Sethian, James},
  title = {{Reduced-complexity Image Segmentation Under Parallel Markov Random Field Formulation Using Graph Partitioning}},
  booktitle = {IEEE International Conference on Image Processing (ICIP)},
  month = sep,
  year = {2016},
  address = {Phoenix, AZ, USA},
  doi = {10.1109/ICIP.2016.7532560}
}
```
Bauer, A. C., Jansen, K. E., Bethel, E. W., Ayachit, U., Rasquin, M., Matthews, B., & Jordan, S. (2016, November). In Situ Analysis and Visualization at Scale with PHASTA and ParaView Catalyst on Mira and Theta. SC16 Scientific Visualization Showcase.
```
@inproceedings{Bauer:SC16-phasta:2016,
  title = {{In Situ Analysis and Visualization at Scale with PHASTA and ParaView Catalyst on Mira and Theta}},
  author = {Bauer, Andrew C. and Jansen, Kenneth E. and Bethel, E. Wes and Ayachit, Utkarsh and Rasquin, Michel and Matthews, Benjamin and Jordan, Steve},
  booktitle = {SC16 Scientific Visualization Showcase},
  month = nov,
  year = {2016},
  address = {Salt Lake City, UT, USA}
}
```
Nguyen, H., Stone, D., & Bethel, E. W. (2016, October). Statistical Projections for Multi-dimensional Visual Data Exploration. 6th IEEE Symposium on Large Data Analysis and Visualization.
```
@inproceedings{Nguyen:LDAV:2016,
  author = {Nguyen, Hoa and Stone, D\'aith\'i and Bethel, E. Wes},
  title = {{Statistical Projections for Multi-dimensional Visual Data Exploration}},
  booktitle = {6th IEEE Symposium on Large Data Analysis and Visualization},
  month = oct,
  year = {2016},
  address = {Baltimore, MD, USA}
}
```
Bethel, E. W., & (eds.), M. G. (2016). Report of the DOE Workshop on Management, Analysis, and Visualization of Experimental and Observational data – The Convergence of Data and Computing. Lawrence Berkeley National Laboratory. https://doi.org/doi.org/10.2172/1525145
```
@techreport{Bethel:ASCR-EOD-Workshop-Report:2015,
  author = {Bethel, E. Wes and (eds.), Martin Greenwald},
  title = {{Report of the DOE Workshop on Management, Analysis, and Visualization of Experimental and Observational data -- The Convergence of Data and Computing}},
  month = may,
  year = {2016},
  xx_note = {LBNL-1005155, \url{https://doi.org/10.2172/1525145}},
  doi = {doi.org/10.2172/1525145},
  xx_eprint = {https://doi.org/10.2172/1525145},
  institution = {Lawrence Berkeley National Laboratory},
  address = {Berkeley, CA, USA, 94720}
}
```
Nguyen, H. T., Stone, D., & Bethel, E. W. (2016). Statistical Projections for Multi-resolution, Multi-dimensional Visual Data Exploration and Analysis. Lawrence Berkeley National Laboratory.
```
@techreport{nguyen-multires:2016,
  author = {Nguyen, Hoa T. and Stone, D\'aith\'i and Bethel, E. Wes},
  title = {{Statistical Projections for Multi-resolution, Multi-dimensional Visual Data Exploration and Analysis}},
  month = jan,
  year = {2016},
  ignorenote = {LBNL-1003958},
  institution = {Lawrence Berkeley National Laboratory},
  address = {Berkeley, CA, USA, 94720}
}
```

2015

Bethel, E. W., Camp, D., Donofrio, D., & Howison, M. (2015, May). Improving Performance of Structured-memory, Data-Intensive Applications on Multi-core Platforms via a Space-Filling Curve Memory Layout. International Workshop on High Performance Data Intensive Computing, an IEEE International Parallel and Distributed Processing Symposium (IPDPS) Workshop. https://doi.org/10.1109/IPDPSW.2015.71
```
@inproceedings{Bethel:zorder-ipdps:2015,
  author = {Bethel, E. Wes and Camp, David and Donofrio, David and Howison, Mark},
  title = {{Improving Performance of Structured-memory, Data-Intensive Applications on Multi-core Platforms via a Space-Filling Curve Memory Layout}},
  booktitle = {International Workshop on High Performance Data Intensive Computing, an IEEE International Parallel and Distributed Processing Symposium (IPDPS) workshop},
  month = may,
  year = {2015},
  address = {Hyderabad, India},
  ignorenote = {LBNL-6999E, 37\% acceptance rate},
  xx_note = {(37\% acceptance rate)},
  doi = {10.1109/IPDPSW.2015.71}
}
```
Bethel, E. W., Camp, D., Childs, H., Krishnan, H., Loring, B., Morozov, D., Rübel, O., Perciano, T., Ushizima, D., & Weber, G. (2015, January). Towards Exascale: High Performance Visualization and Analytics. U. S. Department of Energy Scientific Data Management, Analysis, and Visualization (SMDAV) Program-Wide PI Meeting.
```
@inproceedings{Bethel:LBNL-Base-SMDAV:2015,
  author = {Bethel, E. Wes and Camp, David and Childs, Hank and Krishnan, Hari and Loring, Burlen and Morozov, Dmitriy and R\"ubel, Oliver and Perciano, Talita and Ushizima, Daniela and Weber, Gunther},
  title = {{Towards Exascale: High Performance Visualization and Analytics}},
  booktitle = {U. S. Department of Energy Scientific Data Management, Analysis, and Visualization (SMDAV) Program-wide PI Meeting},
  month = jan,
  year = {2015},
  address = {Walnut Creek, CA, USA}
}
```
Bethel, E. W., Loring, B., Morozov, D., Sim, A., Weber, G. H., Ferrier, N., Vishwanath, V., Schwaan, K., Wolf, M., Duque, E., Whitlock, B., Ayachit, U., & O’Leary, P. (2015, January). Scalable Analysis Methods and In Situ Infrastructure for Extreme Scale Knowledge Discovery. U. S. Department of Energy Scientific Data Management, Analysis, and Visualization (SMDAV) Program-Wide PI Meeting.
```
@inproceedings{Bethel:SENSEI-SMDAV:2015,
  author = {Bethel, E. Wes and Loring, Burlen and Morozov, Dmitriy and Sim, Alex and Weber, Gunther H. and Ferrier, Nicola and Vishwanath, Venkat and Schwaan, Karsten and Wolf, Matt and Duque, Earl and Whitlock, Brad and Ayachit, Utkarsh and O'Leary, Patrick},
  title = {{Scalable Analysis Methods and In Situ Infrastructure for Extreme Scale Knowledge Discovery}},
  booktitle = {U. S. Department of Energy Scientific Data Management, Analysis, and Visualization (SMDAV) Program-wide PI Meeting},
  month = jan,
  year = {2015},
  address = {Walnut Creek, CA, USA}
}
```
Bowen, B., Greiner, A., Cholia, S., Louie, K. B., Bethel, E. W., Northen, T. R., & Rübel, O. (2015, February). A web-based portal for next generation mass spectrometry imaging experiments. AAAS Annual Meeting.
```
@inproceedings{Bowen:AAAS:2015,
  author = {Bowen, B. and Greiner, A. and Cholia, S. and Louie, K. B. and Bethel, E. W. and Northen, T. R. and R\"ubel, O.},
  title = {{A web-based portal for next generation mass spectrometry imaging experiments}},
  booktitle = {AAAS Annual Meeting},
  month = feb,
  year = {2015},
  address = {San Jose, CA, USA}
}
```
Bethel, E. W. (2015). zorder-lib: Library API for Z-Order Memory Layout. Lawrence Berkeley National Laboratory.
```
@techreport{Bethel:zorder-lib-tr:2015,
  author = {Bethel, E. Wes},
  title = {{zorder-lib: Library API for Z-Order Memory Layout}},
  institution = {Lawrence Berkeley National Laboratory},
  address = {Berkeley, CA, USA, 94720},
  month = apr,
  year = {2015},
  ignorenote = {LBNL-176763}
}
```

2014

Howison, M., & Bethel, E. W. (2014). GPU-Accelerated Denoising of 3D Magnetic Resonance Images. Journal of Real-Time Image Processing, 1–12. https://doi.org/10.1007/s11554-014-0436-8

@article{Howison:Denoising-JRTIP:2014,
  month = jun,
  year = {2014},
  issn = {1861-8200},
  journal = {Journal of Real-Time Image Processing},
  doi = {10.1007/s11554-014-0436-8},
  title = {{GPU-Accelerated Denoising of 3D Magnetic Resonance Images}},
  xx_url = {http://dx.doi.org/10.1007/s11554-014-0436-8},
  publisher = {Springer Berlin Heidelberg},
  keywords = {MRI denoising; Non-local means; Bilateral filter; Anisotropic diffusion; CUDA},
  author = {Howison, Mark and Bethel, E.Wes},
  pages = {1-12},
  language = {English},
  ignorenote = {LBNL-6707E}
}

Rubel, O., Geddes, C. G. R., Chen, M., Cormier-Michel, E., & Bethel, E. W. (2014). Feature-Based Analysis of Plasma-Based Particle Acceleration Data. IEEE Transactions on Visualization and Computer Graphics, 20(2), 196–210. https://doi.org/10.1109/TVCG.2013.107

@article{Ruebel:Accelerator-TVCG:2014,
  author = {Rubel, Oliver and Geddes, Cameron G.R. and Chen, Min and Cormier-Michel, Estelle and Bethel, E. Wes},
  title = {{Feature-Based Analysis of Plasma-Based Particle Acceleration Data}},
  journal = {IEEE Transactions on Visualization and Computer Graphics},
  volume = {20},
  number = {2},
  issn = {1077-2626},
  month = feb,
  year = {2014},
  pages = {196-210},
  doi = {10.1109/TVCG.2013.107},
  xx_doi = {http://doi.ieeecomputersociety.org/10.1109/TVCG.2013.107},
  publisher = {IEEE Computer Society},
  address = {Los Alamitos, CA, USA}
}

Agranovsky, A., Camp, D., Garth, C., Bethel, E. W., Joy, K. I., & Childs, H. (2014). Improved Post Hoc Flow Analysis Via Lagrangian Representations. Proceedings of the IEEE Symposium on Large Data Analysis and Visualization (LDAV), 67–75. https://doi.org/10.1109/LDAV.2014.7013206 Best Paper Award.
```
@inproceedings{Agranovsky:LDAV2014,
  author = {Agranovsky, Alexy and Camp, David and Garth, Christoph and Bethel, E. Wes and Joy, Kenneth I. and Childs, Hank},
  title = {{Improved Post Hoc Flow Analysis Via Lagrangian Representations}},
  booktitle = {Proceedings of the IEEE Symposium on Large Data Analysis and Visualization (LDAV)},
  month = nov,
  year = {2014},
  pages = {67--75},
  address = {Paris, France},
  ignorenote = {LBNL-6731E, Best Paper Award},
  note = {Best Paper Award},
  doi = {10.1109/LDAV.2014.7013206}
}
```
Bowen, B., Greiner, A., Cholia, S., Louie, K. B., Bethel, E. W., Northen, T. R., & Rübel, O. (2014, June). A web-based portal for next generation mass spectrometry imaging experiments. ASM 2014.
```
@inproceedings{Bowen:ASM:2014,
  author = {Bowen, B. and Greiner, A. and Cholia, S. and Louie, K. B. and Bethel, E. W. and Northen, T. R. and R\"ubel, O.},
  title = {{A web-based portal for next generation mass spectrometry imaging experiments}},
  booktitle = {ASM 2014},
  month = jun,
  year = {2014},
  address = {San Jose, CA, USA}
}
```

2013

Rübel, O., Greiner, A., Cholia, S., Louie, K., Bethel, E. W., Northen, T. R., & Bowen, B. P. (2013). OpenMSI: A High-Performance Web-Based Platform for Mass Spectrometry Imaging. Analytical Chemistry, 85(21), 10354–10361. https://doi.org/10.1021/ac402540a

@article{Ruebel-OpenMSI:AC:2013,
  author = {R\"ubel, Oliver and Greiner, Annette and Cholia, Shreyas and Louie, Katherine and Bethel, E. Wes and Northen, Trent R. and Bowen, Benjamin P.},
  title = {{OpenMSI: A High-Performance Web-Based Platform for Mass Spectrometry Imaging}},
  journal = {Analytical Chemistry},
  volume = {85},
  number = {21},
  pages = {10354-10361},
  year = {2013},
  doi = {10.1021/ac402540a},
  xx_url = {http://pubs.acs.org/doi/abs/10.1021/ac402540a},
  xx_eprint = {http://pubs.acs.org/doi/pdf/10.1021/ac402540a},
  ignorenote = {LBNL-6477E}
}

Williams, D., Doutriaux, C., Patchett, J., Williams, S., Shipman, G., Miller, R., Steed, C., Krishnan, H., Silva, C., Chaudhary, A., Bremer, P.-T., Pugmire, D., Bethel, E. W., Childs, H., Prabhat, M., Geveci, B., Bauer, A., Pletzer, A., Poco, J., … Koop, D. (2013). Ultrascale Visualization of Climate Data. IEEE Computer, 46(9), 68–76. https://doi.org/10.1109/MC.2013.119

@article{Williams:UVCDAT-IEEEComputer:2013,
  author = {Williams, Dean and Doutriaux, Charles and Patchett, John and Williams, Sean and Shipman, Galen and Miller, Ross and Steed, Chad and Krishnan, Harinarayan and Silva, Claudio and Chaudhary, Aashish and Bremer, Peer-Timo and Pugmire, David and Bethel, E. Wes and Childs, Hank and Prabhat, Mr and Geveci, Berk and Bauer, Andrew and Pletzer, Alexander and Poco, Jorge and Ellqvist, Tommy and Santos, Emanuele and Potter, Gerald and Smith, Brian and Maxwell, Thomas and Kindig, David and Koop, David},
  title = {{Ultrascale Visualization of Climate Data}},
  journal = {IEEE Computer},
  volume = {46},
  number = {9},
  issn = {0018-9162},
  year = {2013},
  month = sep,
  pages = {68--76},
  doi = {10.1109/MC.2013.119},
  xx_doi = {http://doi.ieeecomputersociety.org/10.1109/MC.2013.119},
  publisher = {IEEE Computer Society},
  address = {Los Alamitos, CA, USA},
  ignorenote = {LBNL-6278E}
}

Childs, H., Geveci, B., Schroeder, W. J., Meredith, J. S., Moreland, K., Sewell, C., Kuhlen, T., & Bethel, E. W. (2013). Research Challenges for Visualization Software. IEEE Computer, 46(5), 34–42. https://doi.org/10.1109/MC.2013.179

@article{Childs:VisSoftware:2013,
  author = {Childs, Hank and Geveci, Berk and Schroeder, William J. and Meredith, Jeremy S. and Moreland, Kenneth and Sewell, Christopher and Kuhlen, Torsten and Bethel, E. Wes},
  title = {{Research Challenges for Visualization Software}},
  journal = {IEEE Computer},
  volume = {46},
  number = {5},
  year = {2013},
  month = may,
  pages = {34--42},
  doi = {10.1109/MC.2013.179},
  ee = {http://doi.ieeecomputersociety.org/10.1109/MC.2013.179},
  ignorenote = {LBNL-6239E}
}

Camp, D., Bethel, E. W., & Childs, H. (2013). Transitioning Data Flow-Based Visualization Software to Multi-Core Hybrid Parallelism. 3rd International Workshop on Data-Flow Execution Models for Extreme Scale Computing (DFM 2013), 41–44. https://doi.org/10.1109/DFM.2013.12
```
@inproceedings{Camp:DFM2013,
  author = {Camp, David and Bethel, E. Wes and Childs, Hank},
  booktitle = {3rd International Workshop on Data-Flow Execution Models for Extreme Scale Computing (DFM 2013)},
  month = sep,
  pages = {41--44},
  title = {{Transitioning Data Flow-Based Visualization Software to Multi-Core Hybrid Parallelism}},
  year = {2013},
  doi = {10.1109/DFM.2013.12}
}
```

Camp, D., Krishnan, H., Pugmire, D., Garth, C., Johnson, I., Bethel, E. W., Joy, K. I., & Childs, H. (2013). GPU Acceleration of Particle AdvectionWorkloads in a Parallel, Distributed Memory Setting. Proceedings of EuroGraphics Symposium on Parallel Graphics and Visualization, 1–8. https://doi.org/10.2312/EGPGV/EGPGV13/001-008

@inproceedings{Camp:EGPGV2013,
  author = {Camp, David and Krishnan, Hari and Pugmire, David and Garth, Christoph and Johnson, Ian and Bethel, E. Wes and Joy, Kenneth I. and Childs, Hank},
  title = {{GPU Acceleration of Particle AdvectionWorkloads in a Parallel, Distributed Memory Setting}},
  booktitle = {Proceedings of EuroGraphics Symposium on Parallel Graphics and Visualization},
  month = may,
  year = {2013},
  pages = {1--8},
  doi = {10.2312/EGPGV/EGPGV13/001-008},
  ignorenote = {DOI: 10.2312/EGPGV/EGPGV13/001-008. LBNL-6146E},
  xx_note = {DOI: 10.2312/EGPGV/EGPGV13/001-008},
  xx_junk = {10.5555/2602119.2602121}
}

Bethel, E. W., Prabhat, Byna, S., Rübel, O., Wu, K. J., & Wehner, M. (2013, February). Why High Performance Visual Data Analytics is Both Relevant and Difficult. Visualization and Data Analysis, IS&T/SPIE Electronic Imaging 2013. https://doi.org/10.1117/12.2010980
```
@inproceedings{Bethel:VDA-2013-paper,
  author = {Bethel, E. Wes and Prabhat and Byna, Suren and R\"{u}bel, Oliver and Wu, K. John and Wehner, Michael},
  title = {{Why High Performance Visual Data Analytics is Both Relevant and Difficult}},
  booktitle = {{Visualization and Data Analysis, IS\&T/SPIE Electronic Imaging 2013}},
  month = feb,
  year = {2013},
  address = {San Francisco, CA, USA},
  ignorenote = {LBNL-6063E},
  doi = {10.1117/12.2010980}
}
```
Wu, K., Bethel, E. W., Gu, M., Leinweber, D., & Rübel, O. (2013). A Big Data Approach to Analyzing Market Volatility. Social Science Research Network (SSRN). https://doi.org//urlhttp://dx.doi.org/10.2139/ssrn.2274991
```
@techreport{Wu:VPIN-SSRN:2013,
  author = {Wu, Kesheng and Bethel, E. Wes and Gu, Ming and Leinweber, David and R\"ubel, Oliver},
  title = {{A Big Data Approach to Analyzing Market Volatility}},
  institution = {Social Science Research Network (SSRN)},
  year = {2013},
  month = jun,
  doi = {/url{http://dx.doi.org/10.2139/ssrn.2274991}},
  ignorenote = {Available at SSRN: http://ssrn.com/abstract=2274991, LBNL publication number pending}
}
```

2012

Ushizima, D. M., Morozov, D., Weber, G. H., Bianchi, A. G. C., Sethian, J. A., & Bethel, E. W. (2012). Augmented Topological Descriptors of Pore Networks for Material Science. IEEE Transactions on Visualization and Computer Graphics (Proc. IEEE Vis 2012), 18(12), 2041–2050. https://doi.org/10.1109/TVCG.2012.200
```
@article{Ushizima:2012:ATD,
  author = {Ushizima, Daniela M. and Morozov, Dmitriy and Weber, Gunther H. and Bianchi, Andrea G.C. and Sethian, James A. and Bethel, E. Wes},
  title = {Augmented Topological Descriptors of Pore Networks for Material Science},
  journal = {{IEEE} Transactions on Visualization and Computer Graphics (Proc. IEEE Vis 2012)},
  volume = {18},
  number = {12},
  pages = {2041--2050},
  year = {2012},
  doi = {10.1109/TVCG.2012.200},
  ignorenote = {LBNL-5964E}
}
```

Krishnan, H., Meyer, J., Romosan, A., Childs, H., & Bethel, E. W. (2012). Enabling advanced environmental management via remote and distributed visual data exploration and analysis. Computing and Visualization in Science, 15(3), 123–133. https://doi.org/10.1007/s00791-013-0204-5

@article{Krishnan2012,
  author = {Krishnan, Hari and Meyer, J{\"o}rg and Romosan, Alex and Childs, Hank and Bethel, E. Wes},
  title = {Enabling advanced environmental management via remote and distributed visual data exploration and analysis},
  journal = {Computing and Visualization in Science},
  year = {2012},
  month = jun,
  day = {01},
  volume = {15},
  number = {3},
  pages = {123--133},
  issn = {1433-0369},
  doi = {10.1007/s00791-013-0204-5},
  url = {https://doi.org/10.1007/s00791-013-0204-5}
}

Meyer, J., Bethel, E. W., Horsman, J. L., Hubbard, S. S., Krishnan, H., Romosan, A., Keating, E. H., Monroe, L., Strelitz, R., Moore, P., Taylor, G., Torkian, B., Johnson, T. C., & Gorton, I. (2012). Visual Data Analysis as an Integral Part of Environmental Management. IEEE Transactions on Visualization and Computer Graphics, 18(12), 2088–2094. https://doi.org/10.1109/TVCG.2012.278

@article{Meyer:ASCEM-TVCG:2012,
  author = {Meyer, Joerg and Bethel, E. Wes and Horsman, Jennifer L. and Hubbard, Susan S. and Krishnan, Harinarayan and Romosan, Alexandru and Keating, Elizabeth H. and Monroe, Laura and Strelitz, Richard and Moore, Phil and Taylor, Glenn and Torkian, Ben and Johnson, Timothy C. and Gorton, Ian},
  title = {{Visual Data Analysis as an Integral Part of Environmental Management}},
  journal = {IEEE Transactions on Visualization and Computer Graphics},
  volume = {18},
  number = {12},
  issn = {1077-2626},
  year = {2012},
  month = dec,
  pages = {2088-2094},
  doi = {10.1109/TVCG.2012.278},
  publisher = {IEEE Computer Society},
  address = {Los Alamitos, CA, USA},
  ignorenote = {LBNL-6599E}
}

Howison, M., Bethel, E. W., & Childs, H. (2012). Hybrid Parallelism for Volume Rendering on Large-, Multi-, and Many-Core Systems. IEEE Transactions on Visualization and Computer Graphics, 18(1), 17–29. https://doi.org/10.1109/TVCG.2011.24
```
@article{Howison:HybridParallel-TVCG:2012,
  author = {Howison, Mark and Bethel, E. Wes and Childs, Hank},
  journal = {IEEE Transactions on Visualization and Computer Graphics},
  title = {{Hybrid Parallelism for Volume Rendering on Large-, Multi-, and Many-Core Systems}},
  year = {2012},
  volume = {18},
  number = {1},
  pages = {17-29},
  doi = {10.1109/TVCG.2011.24}
}
```
Bethel, E. W., Leinweber, D., Rübel, O., & Wu, K. (2012). Federal Market Information Technology in the Post-Flash Crash Era: Roles for Supercomputing. Journal of Trading, 7(2). https://doi.org/10.3905/jot.2012.7.2.009
```
@article{BethelEtAl:JOT-Jan2012,
  author = {Bethel, E. Wes and Leinweber, David and R\"{u}bel, Oliver and Wu, Kesheng},
  title = {{Federal Market Information Technology in the Post-Flash Crash Era: Roles for Supercomputing}},
  journal = {Journal of Trading},
  volume = {7},
  number = {2},
  month = jan,
  year = {2012},
  doi = {10.3905/jot.2012.7.2.009}
}
```
Bethel, E. W., & Howison, M. (2012). Multi-core and Many-core Shared-memory Parallel Raycasting Volume Rendering Optimization and Tuning. International Journal of High Performance Computing Applications, 26(4), 399–412. https://doi.org/10.1177/1094342012440466
```
@article{Bethel:AutoTuning-IJHPCA:2012,
  author = {Bethel, E. Wes and Howison, Mark},
  title = {{Multi-core and Many-core Shared-memory Parallel Raycasting Volume Rendering Optimization and Tuning}},
  journal = {International Journal of High Performance Computing Applications},
  volume = {26},
  number = {4},
  month = nov,
  pages = {399--412},
  year = {2012},
  doi = {10.1177/1094342012440466},
  ignorenote = {LBNL-5362E}
}
```
Byna, S., Chou, J., Rubel, O., Prabhat, Karimabadi, H., Daughter, W. S., Roytershteyn, V., Bethel, E. W., Howison, M., Hsu, K.-J., Lin, K.-W., Shoshani, A., Uselton, A., & Wu, K. (2012). Parallel I/O, analysis, and visualization of a trillion particle simulation. SC ’12: Proceedings of the International Conference on High Performance Computing, Networking, Storage and Analysis. https://doi.org/10.1109/SC.2012.92
```
@inproceedings{Byna:TrillionParticleSC12:2012,
  author = {Byna, Surendra and Chou, Jerry and Rubel, Oliver and Prabhat and Karimabadi, Homa and Daughter, William S. and Roytershteyn, Vadim and Bethel, E. Wes and Howison, Mark and Hsu, Ke-Jou and Lin, Kuan-Wu and Shoshani, Arie and Uselton, Andrew and Wu, Kesheng},
  booktitle = {SC '12: Proceedings of the International Conference on High Performance Computing, Networking, Storage and Analysis},
  title = {{Parallel I/O, analysis, and visualization of a trillion particle simulation}},
  year = {2012},
  doi = {10.1109/SC.2012.92}
}
```

Bethel, E. W., Byna, S., Chou, J., Cormier-Michel, E., Geddes, C. G. R., Howison, M., Li, F., Prabhat, Qiang, J., Rübel, O., Ryne, R. D., Wehner, M., & Wu, K. (2012, August). Big Data Analysis and Visualization: What Do LINACS and Tropical Storms Have In Common? 11th International Computational Accelerator Physics Conference, ICAP 2012. https://escholarship.org/uc/item/2s74j5fm

@inproceedings{Bethel:ICAP:2012,
  author = {Bethel, E. Wes and Byna, Surendra and Chou, Jerry and Cormier-Michel, Estelle and Geddes, Cameron G. R. and Howison, Mark and Li, Fuyu and Prabhat and Qiang, Ji and R\"ubel, Oliver and Ryne, Robert D. and Wehner, Michael and Wu, Kesheng},
  title = {{Big Data Analysis and Visualization: What Do LINACS and  Tropical Storms Have In Common?}},
  booktitle = {11th International Computational Accelerator Physics Conference, ICAP 2012},
  address = {Rostock-Warnem\"unde, Germany},
  month = aug,
  year = {2012},
  ignorenote = {LBNL-5766E},
  url = {https://escholarship.org/uc/item/2s74j5fm}
}

Balman, M., Pouyoul, E., Yao, Y., Bethel, E. W., Loring, B., Prabhat, Shalf, J., Sim, A., & Tierney, B. L. (2012, June). Experiences with 100G Network Applications. Proceedings of the 5th International Workshop on Data Intensive and Distributed Computing (DIDC 2012). https://crd.lbl.gov/assets/pubs_presos/didc-report.pdf
```
@inproceedings{Balman:DIDC:2012,
  author = {Balman, Mehmet and Pouyoul, Eric and Yao, Yushu and Bethel, E. Wes and Loring, Burlen and Prabhat and Shalf, John and Sim, Alex and Tierney, Brian L.},
  title = {{Experiences with 100G Network Applications}},
  booktitle = {Proceedings of the 5th International Workshop on Data Intensive and Distributed Computing (DIDC 2012)},
  address = {Delft, Netherlands},
  month = jun,
  year = {2012},
  url = {https://crd.lbl.gov/assets/pubs_presos/didc-report.pdf},
  ignorenote = {(LBNL publication number pending)}
}
```
Prabhat, Rübel, O., Byna, S., Wu, K., Li, F., Wehner, M., & Bethel, E. W. (2012, June). TECA: A Parallel Toolkit for Extreme Climate Analysis. Third Worskhop on Data Mining in Earth System Science (DMESS 2012) at the International Conference on Computational Science (ICCS 2012). https://doi.org/10.1016/j.procs.2012.04.093
```
@inproceedings{Prabhat:DMESS:2012,
  author = {Prabhat and R\"ubel, Oliver and Byna, Surendra and Wu, Kesheng and Li, Fuyu and Wehner, Michael and Bethel, E. Wes},
  title = {{TECA: A Parallel Toolkit for Extreme Climate Analysis}},
  booktitle = {Third Worskhop on Data Mining in Earth System Science (DMESS 2012)
          at the International Conference on Computational Science (ICCS 2012)},
  year = {2012},
  address = {Omaha, Nebraska},
  month = jun,
  doi = {10.1016/j.procs.2012.04.093},
  ignorenote = {LBNL-5352E}
}
```

Bethel, E. W., Childs, H., & Hansen, C. (Eds.). (2012). High Performance Visualization—Enabling Extreme-Scale Scientific Insight. CRC Press/Francis–Taylor Group. https://doi.org/10.1201/b12985

@book{Bethel-Childs-Hansen:HPV:2012,
  publisher = {CRC Press/Francis--Taylor Group},
  year = {2012},
  month = nov,
  title = {{High Performance Visualization---Enabling Extreme-Scale Scientific Insight}},
  editor = {Bethel, E. Wes and Childs, Hank and Hansen, Charles},
  address = {Boca Raton, FL, USA},
  series = {Chapman \& Hall, CRC Computational Science},
  xx_note = {\url{http://www.crcpress.com/product/isbn/9781439875728}, \url{https://doi.org/10.1201/b12985}},
  doi = {10.1201/b12985},
  isbn = {9781439875728}
}

Bethel, E. W., Camp, D., Childs, H., Garth, C., Howison, M., Joy, K. I., & Pugmire, D. (2012). Hybrid Parallelism. In E. W. Bethel, H. Childs, & C. Hansen (Eds.), High Performance Visualization—Enabling Extreme-Scale Scientific Insight (pp. 261–290). CRC Press/Francis–Taylor Group. \urlhttp://www.crcpress.com/product/isbn/9781439875728.

@incollection{Bethel:HybridParallel-HPV-Chapter:2012,
  title = {{Hybrid Parallelism}},
  author = {Bethel, E. Wes and Camp, David and Childs, Hank and Garth, Christoph and Howison, Mark and Joy, Kenneth I. and Pugmire, David},
  booktitle = {{High Performance Visualization---Enabling Extreme-Scale Scientific Insight}},
  editor = {Bethel, E. Wes and Childs, Hank and Hansen, Charles},
  address = {Boca Raton, FL, USA},
  series = {Chapman \& Hall, CRC Computational Science},
  ignorenote = {\url{http://www.crcpress.com/product/isbn/9781439875728}, LBNL-6326E},
  note = {\url{http://www.crcpress.com/product/isbn/9781439875728}},
  isbn = {9781439875728},
  publisher = {CRC Press/Francis--Taylor Group},
  year = {2012},
  month = nov,
  pages = {261--290}
}

Bethel, E. W., & Howison, M. (2012). Performance Optimization and Auto-tuning. In E. W. Bethel, H. Childs, & C. Hansen (Eds.), High Performance Visualization—Enabling Extreme-Scale Scientific Insight (pp. 307–329). CRC Press/Francis–Taylor Group. \urlhttp://www.crcpress.com/product/isbn/9781439875728.

@incollection{Bethel:PerfOpt-HPV-Chapter:2012,
  title = {{Performance Optimization and Auto-tuning}},
  author = {Bethel, E. Wes and Howison, Mark},
  booktitle = {{High Performance Visualization---Enabling Extreme-Scale Scientific Insight}},
  editor = {Bethel, E. Wes and Childs, Hank and Hansen, Charles},
  address = {Boca Raton, FL, USA},
  series = {Chapman \& Hall, CRC Computational Science},
  ignorenote = {\url{http://www.crcpress.com/product/isbn/9781439875728}, LBNL-6466E},
  note = {\url{http://www.crcpress.com/product/isbn/9781439875728}},
  isbn = {9781439875728},
  publisher = {CRC Press/Francis--Taylor Group},
  year = {2012},
  month = nov,
  pages = {307--329}
}

Bethel, E. W., & Miller, M. (2012). Remote and Distributed Visualization Architectures. In E. W. Bethel, H. Childs, & C. Hansen (Eds.), High Performance Visualization—Enabling Extreme-Scale Scientific Insight (pp. 25–48). CRC Press/Francis–Taylor Group. \urlhttp://www.crcpress.com/product/isbn/9781439875728.

@incollection{Bethel:RemoteVis-HPV-Chapter:2012,
  title = {{Remote and Distributed Visualization Architectures}},
  author = {Bethel, E. Wes and Miller, Mark},
  booktitle = {{High Performance Visualization---Enabling Extreme-Scale Scientific Insight}},
  editor = {Bethel, E. Wes and Childs, Hank and Hansen, Charles},
  address = {Boca Raton, FL, USA},
  series = {Chapman \& Hall, CRC Computational Science},
  ignorenote = {\url{http://www.crcpress.com/product/isbn/9781439875728}, LBNL-6325E},
  note = {\url{http://www.crcpress.com/product/isbn/9781439875728}},
  isbn = {9781439875728},
  publisher = {CRC Press/Francis--Taylor Group},
  year = {2012},
  month = nov,
  pages = {25--48}
}

Hansen, C., Bethel, E. W., Ize, T., & Brownlee, C. (2012). Rendering. In E. W. Bethel, H. Childs, & C. Hansen (Eds.), High Performance Visualization—Enabling Extreme-Scale Scientific Insight (pp. 49–60). CRC Press/Francis–Taylor Group. \urlhttp://www.crcpress.com/product/isbn/9781439875728.

@incollection{Bethel:Rendering-HPV-Chapter:2012,
  title = {{Rendering}},
  author = {Hansen, Charles and Bethel, E. Wes and Ize, Thiago and Brownlee, Carson},
  booktitle = {{High Performance Visualization---Enabling Extreme-Scale Scientific Insight}},
  editor = {Bethel, E. Wes and Childs, Hank and Hansen, Charles},
  address = {Boca Raton, FL, USA},
  series = {Chapman \& Hall, CRC Computational Science},
  ignorenote = {\url{http://www.crcpress.com/product/isbn/9781439875728}, LBNL-6324E},
  note = {\url{http://www.crcpress.com/product/isbn/9781439875728}},
  isbn = {9781439875728},
  publisher = {CRC Press/Francis--Taylor Group},
  year = {2012},
  month = nov,
  pages = {49--60}
}

Rübel, O., Bethel, E. W., Prabhat, & Wu, K. (2012). Query-Driven Visualization and Analysis. In E. W. Bethel, H. Childs, & C. Hansen (Eds.), High Performance Visualization—Enabling Extreme-Scale Scientific Insight (pp. 117–144). CRC Press/Francis–Taylor Group. \urlhttp://www.crcpress.com/product/isbn/9781439875728.

@incollection{Ruebel:QDV-HPV-Chapter:2012,
  title = {{Query-Driven Visualization and Analysis}},
  author = {R\"ubel, Oliver and Bethel, E. Wes and Prabhat and Wu, Kesheng},
  booktitle = {{High Performance Visualization---Enabling Extreme-Scale Scientific Insight}},
  editor = {Bethel, E. Wes and Childs, Hank and Hansen, Charles},
  address = {Boca Raton, FL, USA},
  series = {Chapman \& Hall, CRC Computational Science},
  ignorenote = {\url{http://www.crcpress.com/product/isbn/9781439875728}, LBNL-6323E},
  note = {\url{http://www.crcpress.com/product/isbn/9781439875728}},
  isbn = {9781439875728},
  publisher = {CRC Press/Francis--Taylor Group},
  year = {2012},
  month = nov,
  pages = {117--144}
}

Childs, H., Pugmire, D., Ahern, S., Whitlock, B., Howison, M., Prabhat, Weber, G., & Bethel, E. W. (2012). Visualization at Extreme Scale Concurrency. In E. W. Bethel, H. Childs, & C. Hansen (Eds.), High Performance Visualization—Enabling Extreme-Scale Scientific Insight (pp. 291–306). CRC Press/Francis–Taylor Group. \urlhttp://www.crcpress.com/product/isbn/9781439875728.

@incollection{Childs:ESC-HPV-Chapter:2012,
  title = {{Visualization at Extreme Scale Concurrency}},
  author = {Childs, Hank and Pugmire, David and Ahern, Sean and Whitlock, Brad and Howison, Mark and Prabhat and Weber, Gunther and Bethel, E. Wes},
  booktitle = {{High Performance Visualization---Enabling Extreme-Scale Scientific Insight}},
  editor = {Bethel, E. Wes and Childs, Hank and Hansen, Charles},
  address = {Boca Raton, FL, USA},
  series = {Chapman \& Hall, CRC Computational Science},
  ignorenote = {\url{http://www.crcpress.com/product/isbn/9781439875728}, LBNL-6321E},
  note = {\url{http://www.crcpress.com/product/isbn/9781439875728}},
  isbn = {9781439875728},
  publisher = {CRC Press/Francis--Taylor Group},
  year = {2012},
  month = nov,
  pages = {291--306}
}

Childs, H., Brugger, E., Whitlock, B., Meredith, J., Ahern, S., Pugmire, D., Biagas, K., Miller, M., Weber, G. H., Krishnan, H., Fogal, T., Sanderson, A., Garth, C., Bethel, E. W., Camp, D., Rübel, O., Durant, M., Favre, J., & Navratil, P. (2012). VisIt: An End-User Tool for Visualizing and Analyzing Very Large Data. In E. W. Bethel, H. Childs, & C. Hansen (Eds.), High Performance Visualization—Enabling Extreme-Scale Scientific Insight (pp. 357–372). CRC Press/Francis–Taylor Group. \urlhttp://www.crcpress.com/product/isbn/9781439875728.

@incollection{Childs:VisIt-HPV-Chapter:2012,
  title = {{VisIt: An End-User Tool for Visualizing and Analyzing Very Large Data}},
  author = {Childs, Hank and Brugger, Eric and Whitlock, Brad and Meredith, Jeremy and Ahern, Sean and Pugmire, David and Biagas, Kathleen and Miller, Mark and Weber, Gunther H. and Krishnan, Hari and Fogal, Thomas and Sanderson, Allen and Garth, Christoph and Bethel, E. Wes and Camp, David and R\"ubel, Oliver and Durant, Marc and Favre, Jean and Navratil, Paul},
  booktitle = {{High Performance Visualization---Enabling Extreme-Scale Scientific Insight}},
  editor = {Bethel, E. Wes and Childs, Hank and Hansen, Charles},
  address = {Boca Raton, FL, USA},
  series = {Chapman \& Hall, CRC Computational Science},
  ignorenote = {\url{http://www.crcpress.com/product/isbn/9781439875728}, LBNL-6320E},
  note = {\url{http://www.crcpress.com/product/isbn/9781439875728}},
  isbn = {9781439875728},
  publisher = {CRC Press/Francis--Taylor Group},
  year = {2012},
  month = nov,
  pages = {357--372}
}

Rübel, O., Keränen, S. V. E., Biggin, M. D., Knowles, D. W., Weber, G. H., Hagen, H., Hamann, B., & Bethel, E. W. (2012). Linking Advanced Visualization and MATLAB for the Analysis of 3D Gene Expression Data. In L. Linsen, B. Hamann, H. Hagen, & H.-C. Hege (Eds.), Visualization in Medicine and Life Sciences II, Progress and New Challenges (pp. 267–285). Springer Verlag. https://doi.org/10.1007/978-3-642-21608-4_15

@incollection{Ruebel:PCXM:2012,
  title = {{Linking Advanced Visualization and MATLAB for the Analysis of 3D Gene Expression Data}},
  series = {Mathematics and Visualization},
  booktitle = {Visualization in Medicine and Life Sciences II, Progress and New Challenges},
  author = {R{\"u}bel, O. and Ker{\"a}nen, S.V.E. and Biggin, M.D. and Knowles, D.W. and Weber, G.H. and Hagen, H. and Hamann, B. and Bethel, E.W.},
  month = jan,
  year = {2012},
  pages = {267--285},
  publisher = {Springer Verlag},
  address = {Heidelberg, Germany},
  editor = {Linsen, L. and Hamann, B. and Hagen, H. and Hege, H.-C.},
  isbn = {978-3-642-21607-7},
  doi = {10.1007/978-3-642-21608-4_15},
  ignorenote = {LBNL-4891E}
}

Rübel, O., Geddes, C. G. R., Chen, M., Cormier-Michel, E., & Bethel, E. W. (2012, October). Query-driven Analysis of Plasma-based Particel Acceleration Data. Poster Abstracts of IEEE VisWeek 2012.
```
@inproceedings{Ruebel:SciVis:2012,
  author = {R\"ubel, Oliver and Geddes, Cameron G. R. and Chen, Min and Cormier-Michel, Estelle and Bethel, E. Wes},
  title = {{Query-driven Analysis of Plasma-based Particel Acceleration Data}},
  booktitle = {Poster Abstracts of IEEE VisWeek 2012},
  year = {2012},
  month = oct,
  location = {Seattle, WA},
  ignorenote = {LBNL-5906E}
}
```
Byna, S., Chou, J., Rubel, O., Prabhat, Karimabadi, H., Daughton, W. S., Roytershteyn, V., Bethel, E. W., Howison, M., Hsu, K.-J., Lin, K.-W., Shoshani, A., Uselton, A., & Wu, K. (2012, September). Parallel Data Storage, Analysis, and Visualization of a Trillion Particles. Extremely Large Databases and Data Management.
```
@inproceedings{Byna:XLDB:2012,
  author = {Byna, S. and Chou, J. and Rubel, O. and Prabhat and Karimabadi, H. and Daughton, W. S. and Roytershteyn, V. and Bethel, E. W. and Howison, M. and Hsu, K.-J. and Lin, K.-W. and Shoshani, A. and Uselton, A. and Wu, K.},
  title = {Parallel Data Storage, Analysis, and Visualization of a Trillion Particles},
  booktitle = {Extremely Large Databases and Data Management},
  series = {XLDB},
  month = sep,
  year = {2012},
  ignorenote = {Poster}
}
```
Bethel, E. W., Ross, R., Liao, W.-K., Prabhat, Schuchardt, K., Bremer, P.-T., Rübel, O., Byna, S., Wu, K., Li, F., Wehner, M., Patchett, J., Shen, H.-W., Pugmire, D., & Williams, D. (2012, September). Recent Advances in Visual Data Exploration and Analysis of Climate Data. SciDAC 3 Principal Investigator Meeting.
```
@inproceedings{Bethel:SciDAC3-climate-poster:2012,
  author = {Bethel, E. Wes and Ross, Rob and Liao, Wei-Ken and Prabhat and Schuchardt, Karen and Bremer, Peer-Timo and R\"{u}bel, Oliver and Byna, Surendra and Wu, Kesheng and Li, Fuyu and Wehner, Michael and Patchett, John and Shen, Han-Wei and Pugmire, David and Williams, Dean},
  title = {{Recent Advances in Visual Data Exploration and Analysis of Climate Data}},
  booktitle = {{SciDAC 3 Principal Investigator Meeting}},
  month = sep,
  year = {2012},
  address = {Rockville, MD, USA}
}
```
Bethel, E. W., Camp, D., Childs, H., Howison, M., Krishnan, H., Loring, B., Meyer, J., Prabhat, Rübel, O., Ushizima, D., & Weber, G. (2012). Towards Exascale: High Performance Visualization and Analytics – Project Status Report. Lawrence Berkeley National Laboratory.
```
@techreport{Bethel:DOE-Exascale:2012,
  author = {Bethel, E. Wes and Camp, David and Childs, Hank and Howison, Mark and Krishnan, Hari and Loring, Burlen and Meyer, J\"{o}rg and Prabhat and R\"{u}bel, Oliver and Ushizima, Daniela and Weber, Gunther},
  title = {{Towards Exascale: High Performance Visualization and Analytics -- Project Status Report}},
  institution = {Lawrence Berkeley National Laboratory},
  address = {Berkeley, CA, USA, 94720},
  month = apr,
  year = {2012},
  ignorenote = {LBNL-5767E}
}
```
Bethel, E. W. (2012). Exploration of Optimization Options for Increasing Performance of a GPU Implementation of a Three-Dimensional Bilateral Filter. Lawrence Berkeley National Laboratory.
```
@techreport{Bethel:GPUOptimization:2012,
  author = {Bethel, E. Wes},
  title = {{Exploration of Optimization Options for Increasing Performance of a GPU Implementation of a Three-Dimensional Bilateral Filter}},
  institution = {Lawrence Berkeley National Laboratory},
  address = {Berkeley, CA, USA, 94720},
  year = {2012},
  ignorenote = {LBNL-5406E}
}
```

2011

Howison, M., Bethel, E. W., & Childs, H. (2011). Hybrid Parallelism for Volume Rendering on Large, Multi- and Many-core Systems. IEEE Transactions on Visualization and Computer Graphics, Preprints.
```
@article{Howison:HybridVR-TVCG:2011,
  author = {Howison, Mark and Bethel, E. Wes and Childs, Hank},
  title = {{Hybrid Parallelism for Volume Rendering on Large, Multi- and Many-core Systems}},
  journal = {IEEE Transactions on Visualization and Computer Graphics},
  year = {2011},
  volume = {Preprints},
  ignorenote = {LBNL-4370E}
}
```

Gosink, L. J., Garth, C., Anderson, J. C., Bethel, E. W., & Joy, K. I. (2011). An Application of Multivariate Statistical Analysis for Query-Driven Visualization. IEEE Transactions on Visualization and Computer Graphics, 17(3), 264–275. https://doi.org/10.1109/TVCG.2010.80

@article{Gosink:TVCG:2011,
  author = {Gosink, Luke J. and Garth, Christoph and Anderson, John C. and Bethel, E. Wes and Joy, Kenneth I.},
  title = {{An Application of Multivariate Statistical Analysis for Query-Driven Visualization}},
  journal = {IEEE Transactions on Visualization and Computer Graphics},
  volume = {17},
  number = {3},
  issn = {1077-2626},
  year = {2011},
  pages = {264-275},
  doi = {10.1109/TVCG.2010.80},
  xx_doi = {http://doi.ieeecomputersociety.org/10.1109/TVCG.2010.80},
  publisher = {IEEE Computer Society},
  address = {Los Alamitos, CA, USA},
  ignorenote = {LBNL-3536E}
}

Chou, J., Howison, M., Austin, B., Wu, K., Bethel, J. Q. E. W., Shoshani, A., Rübel, O., Prabhat, & Ryne, R. D. (2011). Parallel Index and Query for Large Scale Data Analysis. Proceedings of 2011 International Conference for High Performance Computing, Networking, Storage and Analysis, 30:1–30:11. https://doi.org/10.1145/2063384.2063424

@inproceedings{Chou:SC11:2011,
  author = {Chou, Jerry and Howison, Mark and Austin, Brian and Wu, Kesheng and Bethel, Ji Qiang E. Wes and Shoshani, Arie and R\"{u}bel, Oliver and Prabhat and Ryne, Rob D.},
  title = {{Parallel Index and Query for Large Scale Data Analysis}},
  booktitle = {Proceedings of 2011 International Conference for High Performance Computing, Networking, Storage and Analysis},
  series = {SC '11},
  year = {2011},
  month = nov,
  isbn = {978-1-4503-0771-0},
  location = {Seattle, Washington},
  pages = {30:1--30:11},
  articleno = {30},
  numpages = {11},
  doi = {10.1145/2063384.2063424},
  acmid = {2063424},
  address = {Seattle, WA, USA},
  keywords = {indexing systems, large scale data analysis},
  ignorenote = {LBNL-5317E}
}

Zhuo, W., Prabhat, Paciorek, C., Kaufman, C., & Bethel, E. W. (2011). Parallel Kriging Analysis for Large Spatial Datasets. 2012 IEEE 12th International Conference on Data Mining Workshops, 38–44. https://doi.org/10.1109/ICDMW.2011.134
```
@inproceedings{Zhuo:Kriging-ICDMW:2011,
  author = {Zhuo, Wei and Prabhat and Paciorek, Chris and Kaufman, Cari and Bethel, E. Wes},
  title = {{Parallel Kriging Analysis for Large Spatial Datasets}},
  booktitle = {2012 IEEE 12th International Conference on Data Mining Workshops},
  isbn = {978-0-7695-4409-0},
  year = {2011},
  month = dec,
  pages = {38--44},
  doi = {10.1109/ICDMW.2011.134},
  address = {Vancouver, BC, Canada}
}
```
Ushizima, D., Parkinson, D., Nico, P., Ajo-Franklin, J., Macdowell, A., Kocar, B., Bethel, E. W., & Sethian, J. (2011, August). Statistical Segmentation and Porosity Quantification of 3D X-Ray Microtomorgraphy. XXXIV Applications of Digital Image Processing: Proceedings of SPIE 2011. https://doi.org/10.1117/12.892809
```
@inproceedings{Ushizima:SPIE-Segmentation:2011,
  author = {Ushizima, D. and Parkinson, D. and Nico, P. and Ajo-Franklin, J. and Macdowell, A. and Kocar, B. and Bethel, E. Wes and Sethian, J.},
  title = {{Statistical Segmentation and Porosity Quantification of 3D X-Ray Microtomorgraphy}},
  booktitle = {XXXIV Applications of Digital Image Processing: Proceedings of SPIE 2011},
  month = aug,
  year = {2011},
  address = {San Diego, CA, USA},
  ignorenote = {(LBNL publication number pending)},
  doi = {10.1117/12.892809}
}
```
Bethel, E. W., Leinweber, D., Rübel, O., & Wu, K. (2011, November). Federal Market Information Technology in the Post Flash Crash Era: Roles of Supercomputing. Workshop on High Performance Computational Finance at SC11. https://doi.org/10.1145/2088256.2088267 (authors in alphabetical order).
```
@inproceedings{cift:sc11,
  author = {Bethel, E. Wes and Leinweber, D. and R\"ubel, O. and Wu, K.},
  title = {{Federal Market Information Technology in the Post Flash Crash Era: Roles of Supercomputing}},
  booktitle = {Workshop on High Performance Computational Finance at SC11},
  year = {2011},
  address = {Seattle, WA, USA},
  month = nov,
  note = {(authors in alphabetical order)},
  ignorenote = {(authors in alphabetical order), LBNL-5263E},
  doi = {10.1145/2088256.2088267}
}
```
Bethel, E. W., van Rosendale, J., Southard, D., Gaither, K., Childs, H., Brugger, E., & Ahern, S. (2011). Visualization at Supercomputing Centers: The Tale of Little Big Iron and the Three Skinny Guys. IEEE Computer Graphics and Applications, 31(1), 90–95.
```
@article{Bethel:SkinnyGuys:2011,
  author = {Bethel, E. Wes and van Rosendale, John and Southard, Dale and Gaither, Kelly and Childs, Hank and Brugger, Eric and Ahern, Sean},
  title = {{Visualization at Supercomputing Centers: The Tale of Little Big Iron and the Three Skinny Guys}},
  journal = {IEEE Computer Graphics and Applications},
  year = {2011},
  month = jan,
  volume = {31},
  number = {1},
  pages = {90--95},
  ignorenote = {LBNL-4180E}
}
```

2010

Childs, H., Pugmire, D., Ahern, S., Whitlock, B., Howison, M., Prabhat, Weber, G., & Bethel, E. W. (2010). Extreme Scaling of Production Visualization Software on Diverse Architectures. IEEE Computer Graphics and Applications, 30(3), 22–31. https://doi.org/10.1109/MCG.2010.51
```
@article{Childs:Extreme-CGA:2010,
  author = {Childs, Hank and Pugmire, David and Ahern, Sean and Whitlock, Brad and Howison, Mark and Prabhat and Weber, Gunther and Bethel, E. Wes},
  title = {{Extreme Scaling of Production Visualization Software on Diverse Architectures}},
  journal = {IEEE Computer Graphics and Applications},
  month = may,
  year = {2010},
  volume = {30},
  number = {3},
  pages = {22--31},
  doi = {10.1109/MCG.2010.51},
  ignorenote = {LBNL-3403E}
}
```

Gosink, L. J., Garth, C., Anderson, J. C., Bethel, E. W., & Joy, K. I. (2010). An Application of Multivariate Statistical Analysis for Query-Driven Visualization. IEEE Transactions on Visualization and Computer Graphics, 99(RapidPosts). https://doi.org/http://doi.ieeecomputersociety.org/10.1109/TVCG.2010.80

@article{Gosink:TVCG:2010,
  author = {Gosink, Luke J. and Garth, Christoph and Anderson, John C. and Bethel, E. Wes and Joy, Kenneth I.},
  title = {{An Application of Multivariate Statistical Analysis for Query-Driven Visualization}},
  journal = {IEEE Transactions on Visualization and Computer Graphics},
  volume = {99},
  number = {RapidPosts},
  issn = {1077-2626},
  year = {2010},
  doi = {http://doi.ieeecomputersociety.org/10.1109/TVCG.2010.80},
  publisher = {IEEE Computer Society},
  address = {Los Alamitos, CA, USA},
  ignorenote = {LBNL-3536E}
}

Rübel, O., Weber, G. H., Huang, M.-Y., Bethel, E. W., Biggin, M. D., Fowlkes, C. C., Hendriks, C. L., Keränen, S. V. E., Eisen, M. B., Knowles, D. W., Malik, J., Hagen, H., & Hamann, B. (2010). Integrating Data Clustering and Visualization for the Analysis of 3D Gene Expression Data. IEEE Transactions on Computational Biology and Bioinformatics, 7(1), 64–79. https://doi.org/10.1109/TCBB.2008.49

@article{Ruebel:2010:TCBB,
  author = {R{\"u}bel, Oliver and Weber, Gunther H. and Huang, Min-Yu and Bethel, E. Wes and Biggin, Mark D. and Fowlkes, Charless. C. and Hendriks, C. Luengo and Ker{\"a}nen, Soile. V. E. and Eisen, Michael B. and Knowles, David W. and Malik, Jitendra and Hagen, Hans and Hamann, Bernd},
  title = {{Integrating Data Clustering and Visualization for the Analysis of
                    3D Gene Expression Data}},
  journal = {IEEE Transactions on Computational Biology and Bioinformatics},
  year = {2010},
  month = mar,
  volume = {7},
  number = {1},
  doi = {10.1109/TCBB.2008.49},
  ignorenote = {LBNL-382E},
  owner = {oruebel},
  timestamp = {2008.05.13},
  pages = {64--79}
}

Howison, M., Bethel, E. W., & Childs, H. (2010, July). Hybrid Parallelism for Volume Rendering on Large, Multi-core Systems. Proceedings of SciDAC 2010.
```
@inproceedings{Howison:SciDAC:2010,
  title = {{Hybrid Parallelism for Volume Rendering on Large, Multi-core Systems}},
  author = {Howison, Mark and Bethel, E. Wes and Childs, Hank},
  booktitle = {Proceedings of SciDAC 2010},
  month = jul,
  year = {2010},
  address = {Chattanooga, TN, USA},
  ignorenote = {LBNL-4024E}
}
```

Weber, G. H., Ahern, S., Bethel, E. W., Borovikov, S., Childs, H. R., Deines, E., Garth, C., Hagen, H., Hamann, B., Joy, K. I., Martin, D., Meredith, J., Prabhat, Pugmire, D., Rübel, O., Van Straalen, B., & Wu, K. (2010). Recent Advances in VisIt: AMR Streamlines and Query-Driven Visualization. Numerical Modeling of Space Plasma Flows: Astronum-2009 (Astronomical Society of the Pacific Conference Series), 429, 329–334. https://escholarship.org/uc/item/2rs135v0 LBNL-3185E.

@inproceedings{Weber:2010:RAV,
  author = {Weber, Gunther H. and Ahern, Sean and Bethel, E. Wes and Borovikov, Sergey and Childs, Hank R. and Deines, Eduard and Garth, Christoph and Hagen, Hans and Hamann, Bernd and Joy, Kenneth I. and Martin, Daniel and Meredith, Jeremy and Prabhat and Pugmire, Dave and R{\"u}bel, Oliver and Van Straalen, Brian and Wu, Kesheng},
  title = {Recent Advances in VisIt: AMR Streamlines and Query-Driven Visualization},
  booktitle = {Numerical Modeling of Space Plasma Flows: Astronum-2009 (Astronomical Society of the Pacific Conference Series)},
  volume = {429},
  pages = {329--334},
  year = {2010},
  note = {LBNL-3185E},
  url = {https://escholarship.org/uc/item/2rs135v0},
  escholarshipurl = {https://escholarship.org/uc/item/2rs135v0}
}

Howison, M., Bethel, E. W., & Childs, H. (2010, June). Hybrid Parallelism for Volume Rendering on Large, Multi-core Systems. Proceedings of Astronum 2010.
```
@inproceedings{Howison:Astronum:2010,
  title = {{Hybrid Parallelism for Volume Rendering on Large, Multi-core Systems}},
  author = {Howison, Mark and Bethel, E. Wes and Childs, Hank},
  booktitle = {Proceedings of Astronum 2010},
  month = jun,
  year = {2010},
  address = {San Diego, CA, USA},
  ignorenote = {LBNL-4024E-Conf}
}
```

Howison, M., Adelmann, A., Bethel, E. W., Gsell, A., Oswald, B., & Prabhat. (2010). H5hut: A high-performance I/O library for particle-based simulations. 2010 IEEE International Conference On Cluster Computing Workshops and Posters (CLUSTER WORKSHOPS). https://doi.org/10.1109/CLUSTERWKSP.2010.5613098

@inproceedings{Howison:IASDS10:2010,
  author = {Howison, Mark and Adelmann, Andreas and Bethel, E. Wes and Gsell, Achim and Oswald, Benedikt and Prabhat},
  booktitle = {2010 IEEE International Conference On Cluster Computing Workshops and Posters (CLUSTER WORKSHOPS)},
  title = {H5hut: A high-performance I/O library for particle-based simulations},
  year = {2010},
  volume = {},
  number = {},
  keywords = {Data models;Libraries;Data visualization;Writing;Analytical models;Optimization;Computational modeling;Parallel I/O},
  doi = {10.1109/CLUSTERWKSP.2010.5613098}
}

Rübel, O., Ahern, S., Bethel, E. W., Biggin, M. D., Childs, H., Cormier-Michel, E., DePace, A., Eisen, M. B., Fowlkes, C. C., Geddes, C. G. R., Hagen, H., Hamann, B., Huang, M.-Y., Keränen, S. V. E., Knowles, D. W., Hendriks, C. L. L., Malik, J., Meredith, J., Messmer, P., … Wu, K. (2010, May). Coupling Visualization and Data Analysis for Knowledge Discovery from Multi-dimensional. Procedia Computer Science, Proceedings of International Conference on Computational Science, ICCS 2010. https://doi.org/10.1016/j.procs.2010.04.197

@inproceedings{Ruebel:ICCS:2010,
  title = {{Coupling Visualization and Data Analysis for Knowledge Discovery from Multi-dimensional}},
  author = {R\"{u}bel, Oliver and Ahern, Sean and Bethel, E. Wes and Biggin, Mark. D and Childs, Hank and Cormier-Michel, Estelle and DePace, Angela and Eisen, Michael B. and Fowlkes, Charless C. and Geddes, Cameron G. R. and Hagen, Hans and Hamann, Bernd and Huang, Min-Yu and Ker\"{a}nen, Soile V. E. and Knowles, David W. and Hendriks, Cris L. Luengo and Malik, Jitendra and Meredith, Jeremy and Messmer, Peter and Prabhat and Ushizima, Daniela and Weber, Gunther H. and Wu, Kesheng},
  booktitle = {Procedia Computer Science, Proceedings of International Conference on Computational Science, ICCS 2010},
  month = may,
  year = {2010},
  doi = {10.1016/j.procs.2010.04.197},
  ignorenote = {(LBNL pub number pending)}
}

Howison, M., Bethel, E. W., & Childs, H. (2010, May). MPI-hybrid Parallelism for Volume Rendering on Large, Multi-core Systems. Eurographics Symposium on Parallel Graphics And Visualization (EGPGV). https://doi.org/10.2312/EGPGV/EGPGV10/001-010 Best Paper Award.
```
@inproceedings{Howison:EGPGV:2010,
  author = {Howison, Mark and Bethel, E. Wes and Childs, Hank},
  title = {{MPI-hybrid Parallelism for Volume Rendering on Large,
                    Multi-core Systems}},
  booktitle = {Eurographics Symposium on Parallel Graphics and
                    Visualization (EGPGV)},
  year = {2010},
  month = may,
  address = {Norrk\"{o}ping, Sweden},
  ignorenote = {LBNL-3297E, Best Paper Award},
  doi = {10.2312/EGPGV/EGPGV10/001-010},
  note = {Best Paper Award}
}
```
Ushizima, D., Geddes, C., Cormier-Michel, E., Bethel, E. W., Jacobsen, J., Prabhat, Rübel, O., Weber, G., Hamann, B., Messmer, P., & Hagen, H. (2010). Automated Detection and Analysis of Particle Beams in Laser-plasma Accelerator Simulations. In Y. Zhang (Ed.), Machine Learning (pp. 367–389). In-Tech. https://www.osti.gov/biblio/986491 ISBN 978-953-307-033-9.
```
@incollection{LWFA:Intech:2010,
  title = {{Automated Detection and Analysis of Particle Beams in Laser-plasma Accelerator Simulations}},
  booktitle = {Machine Learning},
  author = {Ushizima, Daniela and Geddes, Cameron and Cormier-Michel, Estelle and Bethel, E. Wes and Jacobsen, Janet and Prabhat and R{\"u}bel, Oliver and Weber, Gunther and Hamann, Bernard and Messmer, Peter and Hagen, Hans},
  month = feb,
  year = {2010},
  pages = {367-389},
  publisher = {In-Tech},
  editor = {Zhang, Yagang},
  note = {ISBN 978-953-307-033-9},
  url = {https://www.osti.gov/biblio/986491}
}
```
Bethel, E. W. (2010). Using wesBench to Study the Rendering Performance of Graphics Processing Units. Lawrence Berkeley National Laboratory.
```
@techreport{Bethel:wesBench:2010,
  title = {{Using wesBench to Study the Rendering Performance of Graphics Processing Units}},
  author = {Bethel, E. Wes},
  institution = {Lawrence Berkeley National Laboratory},
  address = {Berkeley, CA, USA, 94720},
  year = {2010},
  ignorenote = {LBNL-3025E}
}
```

2009

Bethel, E. W., Johnson, C., Ahern, S., Bell, J., Bremer, P.-T., Childs, H., Cormier-Michel, E., Day, M., Deines, E., Fogal, T., Garth, C., Geddes, C. G. R., Hagen, H., Hamann, B., Hansen, C., Jacobsen, J., Joy, K., Krüger, J., Meredith, J., … Wu., K. (2009). Occam’s Razor and Petascale Visual Data Analysis. Journal of Physics Conference Series, Proceedings of SciDAC 2009, 180, 012084.

@article{Bethel:SciDAC2009,
  author = {Bethel, E. W. and Johnson, C. and Ahern, S. and Bell, J. and Bremer, P.-T. and Childs, H. and Cormier-Michel, E. and Day, M. and Deines, E. and Fogal, T. and Garth, C. and Geddes, C. G. R. and Hagen, H. and Hamann, B. and Hansen, C. and Jacobsen, J. and Joy, K. and Kr\"{u}ger, J. and Meredith, J. and Messmer, P. and Ostrouchov, G. and Pascucci, V. and Potter, K. and Prabhat and Pugmire, D. and R\"{u}bel, O. and Sanderson, A. and Silva, C. and Ushizima, D. and Weber, G. and Whitlock, B. and Wu., K.},
  title = {{Occam's Razor and Petascale Visual Data Analysis}},
  journal = {Journal of Physics Conference Series, Proceedings of SciDAC
                    2009},
  volume = {180},
  year = {2009},
  month = jun,
  pages = {012084},
  address = {San Diego, CA, USA},
  ignorenote = {LBNL-2210E}
}

Wu, K., Ahern, S., Bethel, E. W., Chen, J., Childs, H., Cormier-Michel, E., Geddes, C. G. R., Gu, J., Hagen, H., Hamann, B., Koegler, W., Laurent, J., Meredith, J., Messmer, P., Otoo, E., Perevoztchikov, V., Poskanzer, A., Prabhat, Rübel, O., … Zhang, W.-M. (2009). FastBit: Interactively Searching Massive Data. Journal of Physics Conference Series, Proceedings of SciDAC 2009, 180, 012053.

@article{Wu:SciDAC09:2009,
  author = {Wu, K. and Ahern, S. and Bethel, E. W. and Chen, J. and Childs, H. and Cormier-Michel, E. and Geddes, C. G. R. and Gu, J. and Hagen, H. and Hamann, B. and Koegler, W. and Laurent, J. and Meredith, J. and Messmer, P. and Otoo, E. and Perevoztchikov, V. and Poskanzer, A. and Prabhat and R\"{u}bel, O. and Shoshani, A. and Sim, A. and Stockinger, K. and Weber, G. and Zhang, W.-M.},
  title = {{FastBit: Interactively Searching Massive Data}},
  journal = {Journal of Physics Conference Series, Proceedings of SciDAC
                    2009},
  volume = {180},
  pages = {012053},
  year = {2009},
  month = jun,
  address = {San Diego, CA, USA},
  ignorenote = {LBNL-2164E}
}

Rübel, O., Geddes, C. G. R., Cormier-Michel, E., Wu, K., Prabhat, Weber, G. H., Ushizima, D. M., Messmer, P., Hagen, H., Hamann, B., & Bethel, W. (2009). Automatic Beam Path Analysis of Laser Wakefield Particle Acceleration Data. IOP Computational Science & Discovery, 2(015005 (38pp). https://doi.org/10.1088/1749-4699/2/1/015005 LBNL-2734E.

@article{Ruebel:IOPCSD:2009,
  author = {R{\"u}bel, Oliver and Geddes, Cameron G. R. and Cormier-Michel, Estelle and Wu, Kesheng and Prabhat and Weber, Gunther H. and Ushizima, Daniela M. and Messmer, Peter and Hagen, Hans and Hamann, Bernd and Bethel, Wes},
  title = {Automatic Beam Path Analysis of Laser Wakefield Particle Acceleration
    	Data},
  journal = {IOP Computational Science \& Discovery},
  volume = {2},
  number = {015005 (38pp)},
  month = nov,
  year = {2009},
  note = {LBNL-2734E},
  doi = {10.1088/1749-4699/2/1/015005},
  escholarshipurl = {https://escholarship.org/uc/item/59j8k8qr}
}

Kamil, S., Chan, C., Williams, S., Oliker, L., Shalf, J., Howison, M., Bethel, E. W., & Prabhat. (2009, May). A Generalized Framework for Auto-tuning Stencil Computations. Proceedings of Cray User Group Conference. https://www.osti.gov/biblio/1407077 Best Paper Award.
```
@inproceedings{KAMILCUG09,
  author = {Kamil, S. and Chan, C. and Williams, S. and Oliker, L. and Shalf, J. and Howison, M. and Bethel, E. W. and Prabhat},
  title = {{A Generalized Framework for Auto-tuning Stencil Computations}},
  booktitle = {{Proceedings of Cray User Group Conference}},
  note = {Best Paper Award},
  ignorenote = {LBNL-2078E, Best Paper Award},
  year = {2009},
  month = may,
  address = {Atlanta GA, USA},
  url = {https://www.osti.gov/biblio/1407077}
}
```
Gosink, L., Wu, K., Bethel, E. W., Owens, J. D., & Joy, K. I. (2009). Data Parallel Bin-based Indexing for Answering Queries on Multi-core Architectures. 21st International Conference on Scientific and Statistical Database Management (SSDBM), 5566, 110–129. https://doi.org/10.1007/978-3-642-02279-1_9
```
@inproceedings{Gosink:2009:SSDBM,
  author = {Gosink, Luke and Wu, Kesheng and Bethel, E. Wes and Owens, John D. and Joy, Ken I.},
  title = {{Data Parallel Bin-based Indexing for Answering Queries on
                    Multi-core Architectures}},
  booktitle = {21st International Conference on Scientific and Statistical
                    Database Management (SSDBM)},
  year = {2009},
  month = jun,
  pages = {110--129},
  volume = {5566},
  doi = {10.1007/978-3-642-02279-1_9},
  ignorenote = {LBNL-2211E}
}
```
Bethel, E. W., Childs, H., Mascarenhas, A., Pascucci, V., & Prabhat. (2009). Scientific Data Managment Challenges in High Performance Visual Data Analysis. In A. Shoshani & D. Rotem (Eds.), Scientific Data Management: Challenges, Existing Technology, and Deployment. Chapman & Hall/CRC Press.
```
@incollection{Bethel:SDMVis:2008,
  author = {Bethel, E. Wes and Childs, Hank and Mascarenhas, Ajith and Pascucci, Valerio and Prabhat},
  title = {{Scientific Data Managment Challenges in High Performance Visual Data Analysis}},
  booktitle = {Scientific Data Management: Challenges, Existing Technology, and Deployment},
  year = {2009},
  month = dec,
  editor = {Shoshani, Arie and Rotem, Doron},
  publisher = {Chapman \& Hall/CRC Press},
  ignorenote = {LBNL-1449E}
}
```
Garth, C., Deines, E., Joy, K. I., Bethel, E. W., Childs, H., Weber, G., Ahern, S., Pugmire, D., Sanderson, A., & Johnson, C. (2009). Twists and Turns: Vector Field Visual Data Analysis for Petascale Computational Science. SciDAC Review, 15, 10–21.
```
@article{Garth:SciDACReview:2009,
  author = {Garth, Christoph and Deines, Eduard and Joy, Kenneth I. and Bethel, E. Wes and Childs, Hank and Weber, Gunther and Ahern, Sean and Pugmire, Dave and Sanderson, Allen and Johnson, Chris},
  title = {{Twists and Turns: Vector Field Visual Data Analysis for Petascale Computational Science}},
  journal = {SciDAC Review},
  volume = {15},
  month = {Winter},
  year = {2009},
  ignorenote = {LBNL-2983E},
  pages = {10--21}
}
```
Geddes, C. G. R., Cormier-Michel, E., Esarey, E. H., Schroeder, C. B., Vay, J.-L., Leemans, W. P., Bruhwiler, D. L., Cary, J. R., Cowan, B., Durant, M., Hamill, P., Messmer, P., Mullowney, P., Nieter, C., Paul, K., Shasharina, S., Veitzer, S., Weber, G., Rübel, O., … Wu, K. (2009). Large Fields for Smaller Facility Sources. SciDAC Review, 13, 13–21.
```
@article{Geddes:SciDACReview:2009,
  author = {Geddes, C. G. R. and Cormier-Michel, E and Esarey, E. H. and Schroeder, C. B. and Vay, J.-L. and Leemans, W. P. and Bruhwiler, D. L.. and Cary, J. R. and Cowan, B. and Durant, M. and Hamill, P. and Messmer, P. and Mullowney, P. and Nieter, C. and Paul, K. and Shasharina, S. and Veitzer, S. and Weber, G. and R\"{u}bel, O. and Ushizima, D. and Prabhat and Bethel, E. W. and Wu, K.},
  title = {{Large Fields for Smaller Facility Sources}},
  journal = {SciDAC Review},
  volume = {13},
  year = {2009},
  ignorenote = {LBNL-2299E},
  pages = {13--21}
}
```
Bethel, E. W. (2009). High Performance, Three-Dimensional Bilateral Filtering. Lawrence Berkeley National Laboratory. LBNL-1601E, \urlhttps://escholarship.org/uc/item/27g0w91s.
```
@techreport{Bethel:Bilat3D:2009,
  title = {{High Performance, Three-Dimensional Bilateral Filtering}},
  author = {Bethel, E. Wes},
  institution = {Lawrence Berkeley National Laboratory},
  address = {Berkeley, CA, USA, 94720},
  year = {2009},
  note = {LBNL-1601E, \url{https://escholarship.org/uc/item/27g0w91s}},
  ignorenote = {LBNL-1601E}
}
```

2008

Gosink, L. J., Anderson, J. C., Bethel, E. W., & Joy, K. I. (2008). Query-Driven Visualization of Time-Varying Adaptive Mesh Refinement Data. IEEE Transactions on Visualization and Computer Graphics (Special Issue: Proceedings of IEEE Visualization 2008), 14(6), 1715–1722. https://doi.org/10.1109/TVCG.2008.157
```
@article{Gosink:2008:QDV-AMR,
  title = {{Query-Driven Visualization of Time-Varying Adaptive Mesh Refinement Data}},
  author = {Gosink, Luke J. and Anderson, John C. and Bethel, E. Wes and Joy, Kenneth I.},
  journal = {{IEEE} Transactions on Visualization and Computer Graphics (Special Issue: Proceedings of {IEEE} Visualization 2008)},
  year = {2008},
  month = nov,
  volume = {14},
  number = {6},
  ignorenote = {LBNL-803E},
  doi = {10.1109/TVCG.2008.157},
  pages = {1715--1722}
}
```
Paul, B., Ahern, S., Bethel, E. W., Brugger, E., Cook, R., Daniel, J., Lewis, K., Owen, J., & Southard, D. (2008). Chromium Renderserver: Scalable and Open Remote Rendering Infrastructure. IEEE Transactions on Visualization and Computer Graphics, 14(3), 627–639. https://doi.org/10.1109/TVCG.2007.70631
```
@article{Paul:CRRS:2008,
  author = {Paul, Brian and Ahern, Sean and Bethel, E. Wes and Brugger, Eric and Cook, Rich and Daniel, Jamison and Lewis, Ken and Owen, Jens and Southard, Dale},
  title = {{Chromium Renderserver: Scalable and Open Remote Rendering Infrastructure}},
  journal = {IEEE Transactions on Visualization and Computer Graphics},
  volume = {14},
  number = {3},
  year = {2008},
  month = may,
  ignorenote = {LBNL-63693},
  doi = {10.1109/TVCG.2007.70631},
  pages = {627--639}
}
```
Chen, J., Yoon, I., & Bethel, E. W. (2008). Interactive, Internet Delivery of Visualization via Structured, Prerendered Multiresolution Imagery. IEEE Transactions on Visualization and Computer Graphics, 14(2), 302–312. https://doi.org/10.1109/TVCG.2007.70428
```
@article{Chen:TVCG-14-2-2008,
  author = {Chen, Jerry and Yoon, Ilmi and Bethel, E. Wes},
  title = {{Interactive, Internet Delivery of Visualization via Structured, Prerendered Multiresolution Imagery}},
  journal = {{IEEE Transactions on Visualization and Computer Graphics}},
  year = {2008},
  volume = {14},
  number = {2},
  ignorenote = {LBNL-62252},
  doi = {10.1109/TVCG.2007.70428},
  escholarshipurl = {https://escholarship.org/uc/item/99k790zf},
  pages = {302--312}
}
```
Ushizima, D., Rübel, O., Prabhat, Weber, G., Bethel, E. W., Aragon, C., Geddes, C., Cormier-Michel, E., Hamann, B., Messmer, P., & Hagen, H. (2008). Automated Analysis for Detecting Beams in Laser Wakefield Simulations. 2008 Seventh International Conference on Machine Learning And Applications, Proceedings of IEEE ICMLA’08, 382–387. https://doi.org/10.1109/ICMLA.2008.69
```
@inproceedings{Ushizima:ICMLA:2008,
  author = {Ushizima, Daniela and R{\"u}bel, Oliver and Prabhat and Weber, Gunther and Bethel, E. Wes and Aragon, Cecilia and Geddes, Cameron and Cormier-Michel, Estelle and Hamann, Bernd and Messmer, Peter and Hagen, Hans},
  title = {{Automated Analysis for Detecting Beams in Laser Wakefield
                    Simulations}},
  booktitle = {2008 Seventh International Conference on Machine Learning and
                    Applications, Proceedings of IEEE ICMLA'08},
  year = {2008},
  month = dec,
  pages = {382--387},
  doi = {10.1109/ICMLA.2008.69}
}
```
Rübel, O., Prabhat, Wu, K., Childs, H., Meredith, J., Geddes, C. G. R., Cormier-Michel, E., Ahern, S., Weber, G. H., Messmer, P., Hagen, H., Hamann, B., & Bethel, E. W. (2008, November). High Performance Multivariate Visual Data Exploration for Extemely Large Data. Proceeedings of Supercomputing 2008. https://doi.org/10.1109/SC.2008.5214436
```
@inproceedings{Ruebel:SC08,
  author = {R{\"u}bel, Oliver and Prabhat and Wu, Kesheng and Childs, Hank and Meredith, Jeremy and Geddes, Cameraon G. R. and Cormier-Michel, Estelle and Ahern, Sean and Weber, Gunther H. and Messmer, Peter and Hagen, Hans and Hamann, Bernd and Bethel, E. Wes},
  title = {{High Performance Multivariate Visual Data Exploration for Extemely Large Data}},
  booktitle = {{Proceeedings of Supercomputing 2008}},
  year = {2008},
  address = {Austin, TX, USA},
  month = nov,
  doi = {10.1109/SC.2008.5214436},
  ignorenote = {LBNL-716E}
}
```
Bethel, E. W., Rübel, O., Prabhat, Wu, K., Weber, G. H., Pascucci, V., Childs, H., Mascarenhas, A., Meredith, J., & Ahern, S. (2008). Modern Scientific Visualization is More than Just Pretty Pictures. Numerical Modeling of Space Plasma Flows: Astronum-2008 (Astronomical Society of the Pacific Conference Series), 301–317. https://www.osti.gov/biblio/953686
```
@inproceedings{Bethel:Astronum:2008,
  author = {Bethel, E. Wes and R\"{u}bel, Oliver and Prabhat and Wu, Kesheng and Weber, Gunther H. and Pascucci, Valerio and Childs, Hank and Mascarenhas, Ajith and Meredith, Jeremy and Ahern, Sean},
  title = {{Modern Scientific Visualization is More than Just Pretty
                    Pictures}},
  booktitle = {Numerical Modeling of Space Plasma Flows: Astronum-2008
                    (Astronomical Society of the Pacific Conference Series)},
  year = {2008},
  month = jun,
  pages = {301--317},
  address = {St. Thomas, USVI},
  url = {https://www.osti.gov/biblio/953686},
  ignorenote = {LBNL-1450E}
}
```
Weber, G. H., Beckner, V. E., Childs, H., Ligocki, T. J., Miller, M., van Straalen, B., & Bethel, E. W. (2008). Visualization of Scalar Adaptive Mesh Refinement Data. Numerical Modeling of Space Plasma Flows: Astronum-2007 (Astronomical Society of the Pacific Conference Series), 385, 309–320.
```
@inproceedings{Vacet:Gun2008a,
  author = {Weber, Gunther H. and Beckner, Vincent E. and Childs, Hank and Ligocki, Terry J. and Miller, Mark and van Straalen, Brian and Bethel, E. Wes},
  title = {{Visualization of Scalar Adaptive Mesh Refinement Data}},
  booktitle = {Numerical Modeling of Space Plasma Flows: Astronum-2007 (Astronomical Society of the Pacific Conference Series)},
  volume = {385},
  pages = {309--320},
  year = {2008}
}
```
Bethel, E. W. (2008). RM/OpenRM Scene Graph Programming Guide. R3vis Corporation. Commercial product, discontinued.
```
@book{Bethel:RMSG:2008,
  author = {Bethel, E. Wes},
  title = {RM/OpenRM Scene Graph Programming Guide},
  publisher = {R3vis Corporation},
  year = {2008},
  month = nov,
  note = {Commercial product, discontinued}
}
```

Rübel, O., Weber, G. H., Huang, M.-Y., Bethel, E. W., Keränen, S. V. E., Fowlkes, C. C., Hendriks, C. L. L., DePace, A. H., Simirenko, L., Eisen, M. B., Biggin, M. D., Hagen, H., Malik, J., Knowles, D. W., & Hamann, B. (2008). PointCloudXplore 2: Visual Exploration of 3D Gene Expression. In C. Garth, H. Hagen, & M. Hering-Bertram (Eds.), Visualization of Large and Unstructured Data Sets. Gesellschaft fuer Informatik (GI). https://doi.org/10.2172/928314

@incollection{Ruebel:2008:GI,
  title = {PointCloudXplore 2: Visual Exploration of 3D Gene Expression},
  publisher = {Gesellschaft fuer Informatik (GI)},
  year = {2008},
  editor = {Garth, C. and Hagen, H. and Hering-Bertram, M.},
  author = {R{\"u}bel, Oliver and Weber, Gunther H. and Huang, Min-Yu and Bethel, E. Wes and Ker{\"a}nen, Soile V. E. and Fowlkes, Charless C. and Hendriks, Cris L. Luengo and DePace, Angela H. and Simirenko, Lisa and Eisen, Michael B. and Biggin, Mark D. and Hagen, Hans and Malik, Jitendra and Knowles, David W. and Hamann, Bernd},
  series = {GI Lecture Notes in Informatics},
  booktitle = {Visualization of Large and Unstructured Data Sets},
  owner = {OliverRuebel},
  ignorenote = {LBNL Report Number: LBNL-249E},
  timestamp = {2008.05.13},
  doi = {10.2172/928314}
}

Bethel, E. W., Johnson, C., Hansen, C., Silva, C., Parker, S., Sanderson, A., Myers, L., Cole, M., Tricoche, X., Ahern, S., Ostrouchov, G., Pugmire, D., Daniel, J., Meredith, J., Pascucci, V., Childs, H., Bremer, P.-T., Mascarenhas, A., Joy, K., … Prabhat. (2008). Seeing the Unseeable. SciDAC Review, 8, 24–33.

@article{Bethel-EtAl:VACET-SciDAC08:2008,
  author = {Bethel, E. Wes and Johnson, Chris and Hansen, Charles and Silva, Claudio and Parker, Steven and Sanderson, Allen and Myers, Lee and Cole, Martin and Tricoche, Xavier and Ahern, Sean and Ostrouchov, George and Pugmire, Dave and Daniel, Jamison and Meredith, Jeremy and Pascucci, Valerio and Childs, Hank and Bremer, Peer-Timo and Mascarenhas, Ajith and Joy, Ken and Hamann, Bernd and Garth, Christoph and Aragon, Cecilia and Weber, Gunther and Prabhat},
  title = {{Seeing the Unseeable}},
  journal = {SciDAC Review},
  volume = {8},
  month = {Summer},
  year = {2008},
  pages = {24--33},
  ignorenote = {LBNL-472E}
}

Rübel, O., Prabhat, Wu, K., Childs, H., Meredith, J., Geddes, C. G. R., Cormier-Michel, E., Ahern, S., Weber, G. H., Messmer, P., Hagen, H., Hamann, B., & Bethel, E. W. (2008). Application of High-performance Visual Analysis Methods to Laser Wakefield Particle Acceleration Data. In IEEE Visualization 2008.

@misc{Ruebel:Poster:Vis08,
  author = {R{\"u}bel, Oliver and Prabhat and Wu, Kesheng and Childs, Hank and Meredith, Jeremy and Geddes, Cameron G. R. and Cormier-Michel, Estelle and Ahern, Sean and Weber, Gunther H. and Messmer, Peter and Hagen, Hans and Hamann, Bernd and Bethel, E. Wes},
  title = {{Application of High-performance Visual Analysis Methods to Laser
             Wakefield Particle Acceleration Data}},
  booktitle = {IEEE Visualization 2008},
  year = {2008},
  address = {Columbus, Ohio, USA},
  month = oct,
  ignorenote = {LBNL-952E},
  owner = {oruebel}
}

Bethel, E. W., Johnson, C. R., Aragon, C., Prabhat, Rübel, O., Weber, G., Pascucci, V., Childs, H., Bremer, P.-T., Mascarenhas, A., Whitlock, B., Ahern, S., Meredith, J., Ostrouchov, G., Joy, K., Hamann, B., Garth, C., Cole, M., Hansen, C., … Tricoche, X. (2008, April). DOE SciDAC Visualization and Analytics Center for Enabling Technologies. 2008 DOE ASCR CS PI Meeting.
```
@inproceedings{VACET:ASCR_CS_PI:2008,
  author = {Bethel, E. Wes and Johnson, C.R. and Aragon, C. and Prabhat and R{\"u}bel, O. and Weber, G. and Pascucci, V. and Childs, H. and Bremer, P.-T. and Mascarenhas, A. and Whitlock, B. and Ahern, S. and Meredith, J. and Ostrouchov, G. and Joy, K. and Hamann, B. and Garth, C. and Cole, M. and Hansen, C. and Parker, S. and Sanderson, A. and Silva, C.T. and Tricoche, X.},
  title = {{DOE SciDAC Visualization and Analytics Center for Enabling Technologies}},
  booktitle = {{2008 DOE ASCR CS PI Meeting}},
  month = apr,
  year = {2008},
  address = {Denver, CO, USA}
}
```
Gosink, L. J., Wu, K., Bethel, E. W., Owens, J. D., & Joy, K. I. (2008). Bin-Hash Indexing: A Parallel Method for Fast Query Processing. Lawrence Berkeley National Laboratory.
```
@techreport{Gosink:LBNL-729E:2008,
  author = {Gosink, Luke J. and Wu, Kesheng and Bethel, E. Wes and Owens, John D. and Joy, Kenneth I.},
  title = {{Bin-Hash Indexing: A Parallel Method for Fast Query Processing}},
  year = {2008},
  institution = {{Lawrence Berkeley National Laboratory}},
  ignorenote = {LBNL-729E},
  address = {Berkeley, CA, USA, 94720}
}
```

2007

Joy, K. I., Miller, M., Childs, H., Bethel, E. W., Clyne, J., Ostrouchov, G., & Ahern, S. (2007). Frameworks for Visualization at the Extreme Scale. Journal of Physics Conference Series – SciDAC 2007, 78, 012035. https://doi.org/10.1088/1742-6596/78/1/012035
```
@article{Joy:Frameworks:2007,
  author = {Joy, Kenneth I. and Miller, Mark and Childs, Hank and Bethel, E. Wes and Clyne, John and Ostrouchov, George and Ahern, Sean},
  title = {{Frameworks for Visualization at the Extreme Scale}},
  journal = {Journal of Physics Conference Series -- SciDAC 2007},
  volume = {78},
  pages = {012035},
  year = {2007},
  doi = {10.1088/1742-6596/78/1/012035},
  ignorenote = {LBNL-63762}
}
```

Bethel, E. W., Johnson, C., Joy, K., Ahern, S., Pascucci, V., Childs, H., Cohen, J., Duchaineau, M., Hamann, B., Hansen, C., Laney, D., Lindstrom, P., Meredith, J., Ostrouchov, G., Parker, S., Silva, C., Sanderson, A., & Tricoche, X. (2007). SciDAC Visualization and Analytics Center for Enabling Technology. Journal of Physics Conference Series – SciDAC 2007, 78, 012032. https://doi.org/10.1088/1742-6596/78/1/012032

@article{VACET:SciDAC07:2007,
  author = {Bethel, E. Wes and Johnson, Chris and Joy, Ken and Ahern, Sean and Pascucci, Valerio and Childs, Hank and Cohen, Jonathan and Duchaineau, Mark and Hamann, Bernd and Hansen, Charles and Laney, Dan and Lindstrom, Peter and Meredith, Jeremy and Ostrouchov, George and Parker, Steven and Silva, Claudio and Sanderson, Allen and Tricoche, Xavier},
  title = {{SciDAC Visualization and Analytics Center for Enabling Technology}},
  journal = {Journal of Physics Conference Series -- SciDAC 2007},
  year = {2007},
  month = jun,
  volume = {78},
  pages = {012032},
  doi = {10.1088/1742-6596/78/1/012032},
  ignorenote = {LBNL-63542}
}

Gosink, L., Anderson, J. C., Bethel, E. W., & Joy, K. I. (2007). Variable Interactions in Query-Driven Visualization. IEEE Transactions on Visualization and Computer Graphics (Proceedings of Visualization 2007), 13(6), 1400–1407. https://doi.org/10.1109/tvcg.2007.70519 Best Paper Award Finalist.
```
@article{Gosink:VariableInteractionQDV:2007,
  title = {{Variable Interactions in Query-Driven Visualization}},
  author = {Gosink, Luke and Anderson, John C. and Bethel, E. Wes and Joy, Kenneth I.},
  year = {2007},
  journal = {{IEEE Transactions on Visualization and Computer Graphics (Proceedings of Visualization 2007)}},
  month = nov,
  pages = {1400--1407},
  volume = {13},
  number = {6},
  location = {Sacramento, CA, USA},
  doi = {10.1109/tvcg.2007.70519},
  ignorenote = {Nominated for Best Paper Award, LBNL-63254},
  note = {Best Paper Award Finalist}
}
```

Jacobsen, J. S., Joyner, D. C., Borglin, S. E., Hazen, T. C., Arkin, A. P., & Bethel, E. W. (2007). Visualization of Growth Curve Data from Phenotype Microarray Experiments. Information Visualization, 2007. IV ’07. 11th International Conference, 535–544. https://doi.org/10.1109/IV.2007.131

@inproceedings{Jacobsen:IV07:2007,
  author = {Jacobsen, Janet S. and Joyner, Dominique C. and Borglin, Sharon E. and Hazen, Terry C. and Arkin, Adam P. and Bethel, E. Wes},
  title = {{Visualization of Growth Curve Data from Phenotype Microarray Experiments}},
  booktitle = {{Information Visualization, 2007. IV '07. 11th International Conference}},
  publisher = {IEEE Computer Society Press},
  month = jul,
  year = {2007},
  pages = {535--544},
  location = {Z{\"u}rich, Switzerland},
  ignorenote = {LBNL-63251},
  doi = {10.1109/IV.2007.131},
  xx_url = {http://vis.lbl.gov/Publications/2007/LBNL-63251.pdf}
}

Weber, G. H., Beckner, V. E., Childs, H., Ligocki, T. J., Miller, M., van Straalen, B., & Bethel, E. W. (2007). Visualization Tools for Adaptive Mesh Refinement Data. In W. Benger, R. Heinzel, W. Kapferer, W. Schoor, M. Tyagi, S. Venkataraman, & G. H. Weber (Eds.), Proceedings of the 4th High End Visualization Workshop (pp. 12–25). Lehmans Media. https://www.osti.gov/biblio/925532

@inproceedings{Weber:2007:VTAMRD,
  author = {Weber, Gunther H. and Beckner, Vincent E. and Childs, Hank and Ligocki, Terry J. and Miller, Mark and van Straalen, Brian and Bethel, E. Wes},
  title = {Visualization Tools for Adaptive Mesh Refinement Data},
  booktitle = {Proceedings of the 4th High End Visualization Workshop},
  editor = {Benger, Werner and Heinzel, Rene and Kapferer, Wolfgang and Schoor, Wolfram and Tyagi, Mayank and Venkataraman, Shalini and Weber, Gunther H.},
  isbn = {978-3-86541-216-4},
  publisher = {Lehmans Media},
  address = {Berlin, Germany},
  pages = {12--25},
  year = {2007},
  url = {https://www.osti.gov/biblio/925532},
  ignorenote = {LBNL-62954}
}

Adelmann, A., Gsell, A., Oswald, B., Schietinger, T., Bethel, E. W., Shalf, J., Siegerist, C., & Stockinger, K. (2007). Progress on H5Part: A Portable High Performance Parallel Data Interface for Electromagnetic Simulations. Particle Accelerator Conference PAC07 25–29 June 2007, Albuquerque NM. https://doi.org/10.1109/PAC.2007.4440437
```
@inproceedings{Adelmann:H5part:2007,
  author = {Adelmann, Andreas and Gsell, Achim and Oswald, B. and Schietinger, T. and Bethel, E. Wes and Shalf, John and Siegerist, Cristina and Stockinger, Kurt},
  title = {{Progress on H5Part: A Portable High Performance Parallel Data Interface for Electromagnetic Simulations}},
  booktitle = {Particle Accelerator Conference PAC07 25--29 June 2007, Albuquerque NM},
  year = {2007},
  doi = {10.1109/PAC.2007.4440437},
  ignorenote = {LBNL-63042}
}
```

Bethel, E. W., Johnson, C. R., Aragon, C., Prabhat, Rübel, O., Weber, G., Pascucci, V., Childs, H., Bremer, P.-T., Whitlock, B., Ahern, S., Meredith, J., Ostrouchov, G., Joy, K., Hamann, B., Garth, C., Cole, M., Hansen, C., Parker, S., … Tricoche, X. (2007). DOE’s SciDAC Visualization and Analytics Center for Enabling Technologies - Strategy for Petascale Visual Data Analysis Success. CTWatch Quarterly, 3(4).

@article{SCI:Vacet2007b,
  author = {Bethel, E. Wes and Johnson, C.R. and Aragon, C. and Prabhat and R{\"u}bel, O. and Weber, G. and Pascucci, V. and Childs, H. and Bremer, P.-T. and Whitlock, B. and Ahern, S. and Meredith, J. and Ostrouchov, G. and Joy, K. and Hamann, B. and Garth, C. and Cole, M. and Hansen, C. and Parker, S. and Sanderson, A. and Silva, C.T. and Tricoche, X.},
  title = {{DOE's SciDAC Visualization and Analytics Center for Enabling Technologies - Strategy for Petascale Visual Data Analysis Success}},
  title-url = {http://www.ctwatch.org/quarterly/articles/2007/11/does-scidac-visualization-and-analytics-center-for-enabling-technologies-strategy-for-petascale-visual-data-analysis-success/},
  journal = {CTWatch Quarterly},
  volume = {3},
  number = {4},
  year = {2007}
}

Bethel, E. W., Chen, J., & Yoon, I. (2007). Interactive, Internet Delivery of Visualization via Structured, Prerendered Imagery. Lawrence Berkeley National Laboratory.
```
@techreport{LBNL-63675,
  author = {Bethel, E. Wes and Chen, Jerry and Yoon, Ilmi},
  title = {{Interactive, Internet Delivery of Visualization via Structured, Prerendered Imagery}},
  ignorenote = {{LBNL-63675}},
  year = {2007},
  institution = {{Lawrence Berkeley National Laboratory}},
  address = {{Berkeley, CA, USA, 94720}}
}
```
Bethel, E. W., Gosink, L., & Joy, K. I. (2007). Variable Interactions in Query-Driven Visualization. Lawrence Berkeley National Laboratory.
```
@techreport{LBNL-63674,
  author = {Bethel, E. Wes and Gosink, Luke and Joy, Kenneth I.},
  title = {{Variable Interactions in Query-Driven Visualization}},
  ignorenote = {{LBNL-63674}},
  year = {2007},
  institution = {{Lawrence Berkeley National Laboratory}},
  address = {{Berkeley, CA, USA, 94720}}
}
```
Bethel, E. W., Rübel, O., & Weber, G. (2007). Visualization and Analysis of 3D Gene Expression Data. Lawrence Berkeley National Laboratory.
```
@techreport{LBNL-63658,
  author = {Bethel, E. Wes and R\"{u}bel, Oliver and Weber, Gunther},
  title = {{Visualization and Analysis of 3D Gene Expression Data}},
  ignorenote = {{LBNL-63658}},
  year = {2007},
  institution = {{Lawrence Berkeley National Laboratory}},
  address = {{Berkeley, CA, USA, 94720}}
}
```
Weber, G., Childs, H., Bonnell, K., Meredith, J., Miller, M., Whitlock, B., & Bethel, E. W. (2007). Production-quality Tools for Adaptive Mesh Refinement Visualization. Lawrence Berkeley National Laboratory.
```
@techreport{LBNL-63657,
  author = {Weber, Gunther and Childs, Hank and Bonnell, Kathleen and Meredith, Jeremy and Miller, Mark and Whitlock, Brad and Bethel, E. Wes},
  title = {{Production-quality Tools for Adaptive Mesh Refinement Visualization}},
  ignorenote = {{LBNL-63657}},
  year = {2007},
  institution = {{Lawrence Berkeley National Laboratory}},
  address = {{Berkeley, CA, USA, 94720}}
}
```

2006

Bethel, E. W., Johnson, C., Hansen, C., Parker, S., Sanderson, A., Silva, C., Tricoche, X., Pascucci, V., Childs, H., Cohen, J., Duchaineau, M., Laney, D., Lindstrom, P., Ahern, S., Meredith, J., Ostrouchov, G., Joy, K., & Hamann, B. (2006). VACET: Proposed SciDAC2 Visualization and Analytics Center for Enabling Technologies. Journal of Physics Conference Series – SciDAC 2006, 46, 561–569. https://doi.org/10.1088/1742-6596/46/1/078

@article{Bethel:JPCS:2006,
  author = {Bethel, E. Wes and Johnson, Chris and Hansen, Charles and Parker, Steven and Sanderson, Allen and Silva, Claudio and Tricoche, Xavier and Pascucci, Valerio and Childs, Hank and Cohen, Jonathan and Duchaineau, Mark and Laney, Dan and Lindstrom, Peter and Ahern, Sean and Meredith, Jeremy and Ostrouchov, George and Joy, Ken and Hamann, Bernd},
  title = {{VACET: Proposed SciDAC2 Visualization and Analytics Center for
  Enabling Technologies}},
  journal = {Journal of Physics Conference Series -- SciDAC 2006},
  month = jun,
  year = {2006},
  pages = {561--569},
  location = {Denver, CO, USA},
  volume = {46},
  doi = {10.1088/1742-6596/46/1/078},
  ignorenote = {LBNL-60413}
}

Ryne, R. D., Qiang, J., Bethel, E. W., Pogorelov, I., Shalf, J., Siegerist, C., Venturini, M., Dragt, A. J., Adelmann, A., Abell, D., Amundson, J., Spentzouris, P., Neri, F., Walstrom, P., Mottershead, C. T., & Samulyak, R. (2006, October). Recent Progress on the Marylie/Impact Beam Dynamics Code. International Computational Accelerator Physics Conference. https://www.osti.gov/biblio/902811
```
@inproceedings{Ryne:ICAP-Marylie:2006,
  author = {Ryne, R. D. and Qiang, J. and Bethel, E. W. and Pogorelov, I. and Shalf, J. and Siegerist, C. and Venturini, M. and Dragt, A. J. and Adelmann, A. and Abell, D. and Amundson, J. and Spentzouris, P. and Neri, F. and Walstrom, P. and Mottershead, C. T. and Samulyak, R.},
  title = {{Recent Progress on the Marylie/Impact Beam Dynamics Code}},
  booktitle = {International Computational Accelerator Physics Conference},
  address = {Chamonix, France},
  year = {2006},
  month = oct,
  url = {https://www.osti.gov/biblio/902811},
  ignorenote = {LBNL-62017}
}
```

Stockinger, K., Bethel, E. W., Campbell, S., Dart, E., & and Kesheng Wu. (2006, November). Detecting Distributed Scans Using High-Performance Query-Driven Visualization. SC ’06: Proceedings of the 2006 ACM/IEEE Conference on High Performance Computing, Networking, Storage and Analysis. https://doi.org/10.1145/1188455.1188542

@inproceedings{Stockinger:SC06:2006,
  author = {Stockinger, Kurt and Bethel, E. Wes and Campbell, Scott and Dart, Eli and and Kesheng Wu},
  title = {{Detecting Distributed Scans Using High-Performance Query-Driven Visualization}},
  booktitle = {{SC '06: Proceedings of the 2006 ACM/IEEE Conference on High Performance Computing, Networking, Storage and Analysis}},
  month = nov,
  year = {2006},
  location = {Tampa, FL, USA},
  publisher = {IEEE Computer Society Press},
  ignorenote = {LBNL-60053},
  doi = {10.1145/1188455.1188542},
  xx_url = {http://vis.lbl.gov/Publications/2006/LBNL-60053.pdf}
}

Bethel, E. W., Campbell, S., Dart, E., Stockinger, K., & Wu, K. (2006). Accelerating Network Traffic Analysis Using Query-Driven Visualization. Proceedings of 2006 IEEE Symposium on Visual Analytics Science and Technology, 115–122. https://doi.org/10.1109/VAST.2006.261437

@inproceedings{Bethel:VAST:2006,
  author = {Bethel, E. Wes and Campbell, Scott and Dart, Eli and Stockinger, Kurt and Wu, Kesheng},
  title = {{Accelerating Network Traffic Analysis Using Query-Driven Visualization}},
  booktitle = {{Proceedings of 2006 IEEE Symposium on Visual Analytics Science and Technology}},
  month = oct,
  year = {2006},
  pages = {115--122},
  location = {Baltimore, MD, USA},
  publisher = {IEEE Computer Society Press},
  doi = {10.1109/VAST.2006.261437},
  xx_url = {http://vis.lbl.gov/Publications/2006/LBNL-59891.pdf},
  ignorenote = {LBNL-59891}
}

Gosink, L., Shalf, J., Stockinger, K., Wu, K., & Bethel, E. W. (2006). HDF5-FastQuery: Accelerating Complex Queries on HDF Datasets using Fast Bitmap Indices. Proceedings of the 18th International Conference on Scientific and Statistical Database Management, 149–158. https://doi.org/10.1109/SSDBM.2006.27
```
@inproceedings{Gosink:HDF5FastQuery:SSDBM06:2006,
  author = {Gosink, Luke and Shalf, John and Stockinger, Kurt and Wu, Kesheng and Bethel, E. Wes},
  title = {{HDF5-FastQuery: Accelerating Complex Queries on HDF Datasets using Fast Bitmap Indices}},
  booktitle = {Proceedings of the 18th International Conference on Scientific and Statistical Database Management},
  month = jul,
  year = {2006},
  publisher = {IEEE Computer Society Press},
  ignorenote = {LBNL-59602},
  pages = {149--158},
  doi = {10.1109/SSDBM.2006.27}
}
```
Chen, J., Bethel, E. W., & Yoon, I. (2006). Interactive, Internet Delivery of Scientific Visualization via Structured, Prerendered Imagery. In S. Santini, R. Schettini, & T. Gevers (Eds.), Proceedings of 2006 SPIE/IS&T Conference on Electronic Imaging, Volume 6061, A 1-10. https://doi.org/10.1117/12.643142
```
@inproceedings{Chen:SPIE:2006,
  author = {Chen, Jerry and Bethel, E. Wes and Yoon, Ilmi},
  title = {{Interactive, Internet Delivery of Scientific Visualization via Structured, Prerendered Imagery}},
  booktitle = {Proceedings of 2006 SPIE/IS\&T Conference on Electronic Imaging, Volume 6061, A 1-10},
  editor = {Santini, Simone and Schettini, Raimondo and Gevers, Theo},
  ignorenote = {LBNL-57528},
  month = jan,
  year = {2006},
  escholarshipurl = {https://escholarship.org/uc/item/6xq1j5bz},
  doi = {10.1117/12.643142}
}
```

Bethel, E. W., Johnson, C., Hansen, C., Parker, S., Sanderson, A., Silva, C., Trichoche, X., Pascucci, V., Childs, H., Cohen, J., Duchaineau, M., Laney, D., Lindstrom, P., Ahern, S., Meredith, J., Ostouchov, G., Joy, K. I., & Hamann, B. (2006, June). Meet the Proposed SciDAC2 Visualization and Analytics Center for Enabling Technologies. SciDAC 2006 Program Conference.

@inproceedings{VACET:SciDAC:2006,
  author = {Bethel, E. Wes and Johnson, Chris and Hansen, Chuck and Parker, Steven and Sanderson, Allen and Silva, Claudio and Trichoche, Xavier and Pascucci, Valerio and Childs, Hank and Cohen, Jonathan and Duchaineau, Mark and Laney, Daniel and Lindstrom, Peter and Ahern, Sean and Meredith, Jeremy and Ostouchov, George and Joy, Kenneth I. and Hamann, Bernd},
  title = {{Meet the Proposed SciDAC2 Visualization and Analytics Center for Enabling Technologies}},
  booktitle = {SciDAC 2006 Program Conference},
  month = jun,
  year = {2006},
  address = {Denver, CO},
  ignorenote = {LBNL-60478}
}

Wu, K., Stockinger, K., Shoshani, A., & Bethel, E. W. (2006). Fastbit – Helps Finding the Proverbial Needle in a Haystack. Lawrence Berkeley National Laboratory.
```
@techreport{LBNL-PUB-963,
  author = {Wu, Kesheng and Stockinger, Kurt and Shoshani, Arie and Bethel, E. Wes},
  title = {{Fastbit -- Helps Finding the Proverbial Needle in a Haystack}},
  ignorenote = {{LBNL/PUB-963}},
  year = {2006},
  month = jul,
  institution = {{Lawrence Berkeley National Laboratory}},
  address = {{Berkeley, CA, USA, 94720}}
}
```
Bethel, E. W., Gosink, L., Shalf, J., Stockinger, K., & Wu, K. (2006). HDF5-FastQuery: An API for Simplifying Access to Data Storage, Retrieval, Indexing and Querying. Lawrence Berkeley National Laboratory.
```
@techreport{LBNL-PUB-958,
  author = {Bethel, E. Wes and Gosink, Luke and Shalf, John and Stockinger, Kurt and Wu, Kesheng},
  title = {{HDF5-FastQuery: An API for Simplifying Access to Data Storage, Retrieval, Indexing and Querying}},
  ignorenote = {{LBNL/PUB-958}},
  month = jul,
  year = {2006},
  institution = {{Lawrence Berkeley National Laboratory}},
  address = {{Berkeley, CA, USA, 94720}}
}
```
Bethel, E. W., Campbell, S., Dart, E., Shalf, J., Stockinger, K., & Wu, K. (2006). High Performance Visualization Using Query-Driven Visualization and Analytics. Lawrence Berkeley National Laboratory.
```
@techreport{LBNL-PUB-959,
  author = {Bethel, E. Wes and Campbell, Scott and Dart, Eli and Shalf, John and Stockinger, Kurt and Wu, Kesheng},
  title = {{High Performance Visualization Using Query-Driven Visualization and Analytics}},
  ignorenote = {{LBNL/PUB-959}},
  month = jul,
  year = {2006},
  institution = {{Lawrence Berkeley National Laboratory}},
  address = {{Berkeley, CA, USA, 94720}}
}
```

2005

Shah, N., Couronne, O., Pennacchio, L., Brudno, M., Batzoglou, S., Bethel, E. W., Rubin, E., Hamann, B., & Dubchak, I. (2005). Phylo-VISTA: Interactive Visualization of Multiple DNA Sequence Alignments. Bioinformatics, 20(5), 636–643. https://doi.org/10.1093/bioinformatics/btg459
```
@article{Shah:Bioinformatics:2004,
  author = {Shah, Nameeta and Couronne, Olivier and Pennacchio, Len and Brudno, Michael and Batzoglou, Serafim and Bethel, E. Wes and Rubin, Edward and Hamann, Bernd and Dubchak, Inna},
  title = {{Phylo-VISTA: Interactive Visualization of Multiple DNA
                    Sequence Alignments}},
  journal = {Bioinformatics},
  volume = {20},
  number = {5},
  year = {2005},
  month = may,
  pages = {636-643},
  doi = {10.1093/bioinformatics/btg459}
}
```

Stockinger, K., Shalf, J., Wu, K., & Bethel, E. W. (2005). Query-Driven Visualization of Large Data Sets. Proceedings of IEEE Visualization 2005, 167–174. https://doi.org/10.1109/VIS.2005.84

@inproceedings{Stockinger:QDV:IEEE-Vis-2005,
  author = {Stockinger, Kurt and Shalf, John and Wu, Kesheng and Bethel, E. Wes},
  title = {{Query-Driven Visualization of Large Data Sets}},
  booktitle = {{Proceedings of IEEE Visualization 2005}},
  month = oct,
  year = {2005},
  pages = {167--174},
  location = {Minneapolis, MN, USA},
  publisher = {IEEE Computer Society Press},
  xx_url = {http://vis.lbl.gov/Publications/2005/QueryDrivenVis-LBNL-57511.pdf},
  doi = {10.1109/VIS.2005.84},
  escholarshipurl = {https://escholarship.org/uc/item/9xz1s4r8},
  ignorenote = {LBNL-57511}
}

Co, C., Friedman, A., Grote, D., Vay, J.-L., Bethel, E. W., & Joy, K. I. (2005). Interactive Methods for Exploring Particle Simulation Data. Proceedings of EuroVis 2005, 279–286. https://doi.org/10.2312/VisSym/EuroVis05/279-286

@inproceedings{Co:2005:IMF,
  author = {Co, Christopher and Friedman, Alex and Grote, David and Vay, Jean-Luc and Bethel, E. Wes and Joy, Kenneth I.},
  title = {{Interactive Methods for Exploring Particle Simulation Data}},
  booktitle = {Proceedings of EuroVis 2005},
  year = {2005},
  address = {Leeds, UK},
  ignorenote = {LBNL-55353},
  pages = {279--286},
  month = jun,
  doi = {10.2312/VisSym/EuroVis05/279-286},
  xx_url = {https://escholarship.org/uc/item/0v36500n}
}

Stockinger, K., Shalf, J., Bethel, E. W., & Wu, K. (2005). DEX: Increasing the Capability of Scientific Data Analysis Pipelines by Using Efficient Bitmap Indices to Accelerate Scientific Visualization. Proceedings of Scientific and Statistical Database Management Conference (SSDBM), 35–44. https://doi.org/10.2172/837248
```
@inproceedings{Stockinger:DEX-SSDBM:2005,
  author = {Stockinger, Kurt and Shalf, John and Bethel, E. Wes and Wu, Kesheng},
  title = {{DEX: Increasing the Capability of Scientific Data Analysis
                 Pipelines by Using Efficient Bitmap Indices to Accelerate
                 Scientific Visualization}},
  booktitle = {Proceedings of Scientific and Statistical Database Management Conference (SSDBM)},
  year = {2005},
  month = jun,
  address = {Santa Barbara, CA, USA},
  pages = {35--44},
  bibsource = {DBLP, http://dblp.uni-trier.de},
  ignorenote = {LBNL-57203},
  doi = {10.2172/837248}
}
```
Gosink, L., Shalf, J., Stockinger, K., Wu, K., & Bethel, E. W. (2005, November). HDF5-FastQuery: Accelerating Complex Queries on HDF Datasets using Fast Bitmap Indices. 2005 HDF5 Workshop.
```
@inproceedings{Gosink:HDF5-FastQuery:2005,
  author = {Gosink, Luke and Shalf, John and Stockinger, Kurt and Wu, Kesheng and Bethel, E. Wes},
  title = {{HDF5-FastQuery: Accelerating Complex Queries on HDF Datasets using Fast Bitmap Indices}},
  booktitle = {2005 HDF5 Workshop},
  address = {San Francisco, CA, USA},
  month = nov,
  year = {2005},
  ignorenote = {LBNL-59602-Abs}
}
```
Stockinger, K., Wu, K., Campbell, S., Lau, S., Fisk, M., Gavrilov, E., Kent, A., Davis, C., Olinger, R., Young, R., Prewitt, J., Weber, P., Caudell, T., Bethel, E. W., & Smith, S. (2005, November). Network Traffic Analysis with Query-Driven Visualization – SC05 HPC Analytics Challenge Results. SC ’05: Proceedings of the 2005 ACM/IEEE Conference on High Performance Computing, Networking, Storage and Analysis.
```
@inproceedings{Stockinger:QDV:SC05,
  author = {Stockinger, Kurt and Wu, Kesheng and Campbell, Scott and Lau, Steve and Fisk, Mike and Gavrilov, E. and Kent, A. and Davis, C. and Olinger, R. and Young, R. and Prewitt, J. and Weber, P. and Caudell, Tom and Bethel, E. Wes and Smith, Steven},
  title = {{Network Traffic Analysis with Query-Driven Visualization -- SC05 HPC Analytics Challenge Results}},
  booktitle = {{SC '05: Proceedings of the 2005 ACM/IEEE Conference on High Performance Computing, Networking, Storage and Analysis}},
  month = nov,
  year = {2005},
  publisher = {IEEE Computer Society Press},
  ignorenote = {LBNL-58768}
}
```
Bethel, E. W., & Shalf, J. (2005). Consuming Network Bandwidth with Visapult. In C. Hansen & C. Johnson (Eds.), The Visualization Handbook (pp. 569–589). Elsevier. \urlhttp://vis.lbl.gov/Publications/2003/LBNL-52171-VisapultChapter.pdf.
```
@incollection{Visapult:VisHandbook:2005,
  author = {Bethel, E. Wes and Shalf, John},
  editor = {Hansen, Chuck and Johnson, Chris},
  title = {{Consuming Network Bandwidth with Visapult}},
  booktitle = {{The Visualization Handbook}},
  publisher = {Elsevier},
  year = {2005},
  pages = {569--589},
  ignorenote = {LBNL-52171},
  note = {\url{http://vis.lbl.gov/Publications/2003/LBNL-52171-VisapultChapter.pdf}}
}
```
Lu, T.-C., Max, N., Ding, J., Bethel, E. W., & Crivelli, S. N. (2005). DockingShop: A Tool for Interactive Molecular Docking. Lawrence Berkeley National Laboratory.
```
@techreport{LBNL-51870:2005,
  author = {Lu, Ting-Cheng and Max, Nelson and Ding, Jinhui and Bethel, E. Wes and Crivelli, Silvia N.},
  title = {{DockingShop: A Tool for Interactive Molecular Docking}},
  ignorenote = {{LBNL-51870}},
  year = {2005},
  institution = {{Lawrence Berkeley National Laboratory}},
  address = {{Berkeley, CA, USA, 94720}}
}
```
Bethel, E. W., Campbell, S., Dart, E., Lee, J., Smith, S. A., Stockinger, K., Tierney, B., & Wu, K. (2005). Interactive Analysis of Large Network Data Collections Using Query-Driven Visualization. Lawrence Berkeley National Laboratory.
```
@techreport{LBNL-59166:2005,
  author = {Bethel, E. Wes and Campbell, Scott and Dart, Eli and Lee, Jason and Smith, Steven A. and Stockinger, Kurt and Tierney, Brian and Wu, Kesheng},
  title = {{Interactive Analysis of Large Network Data Collections Using Query-Driven Visualization}},
  ignorenote = {LBNL-59166},
  year = {2005},
  institution = {{Lawrence Berkeley National Laboratory}},
  address = {{Berkeley, CA, USA, 94720}}
}
```
Bethel, E. W. (2005). Infrastructure for Scalable and Interoperable Visualization and Analysis Software Technology. Lawrence Berkeley National Laboratory.
```
@techreport{LBNL-PUB-5510:2005,
  title = {{Infrastructure for Scalable and Interoperable
                    Visualization and Analysis Software Technology}},
  author = {Bethel, E. Wes},
  month = jul,
  year = {2005},
  ignorenote = {LBNL-PUB-5510},
  institution = {Lawrence Berkeley National Laboratory},
  address = {{Berkeley, CA, USA, 94720}}
}
```
Bethel, E. W., & Shalf, J. (2005). Algorithms, Frameworks and Toolsets for Remote and Distributed Visualization. Lawrence Berkeley National Laboratory.
```
@techreport{LBNL-58171:2005,
  author = {Bethel, E. Wes and Shalf, John},
  title = {{Algorithms, Frameworks and Toolsets for Remote and Distributed Visualization}},
  month = jul,
  year = {2005},
  ignorenote = {LBNL-58171},
  institution = {Lawrence Berkeley National Laboratory},
  address = {{Berkeley, CA, USA, 94720}}
}
```
Lu, T.-C., Max, N., Ding, J., Bethel, E. W., & Crivelli, S. N. (2005). DockingShop: A Tool for Interactive Molecular Docking. Lawrence Berkeley National Laboratory.
```
@techreport{DockingShop:2005,
  title = {{DockingShop: A Tool for Interactive Molecular Docking}},
  author = {Lu, Ting-Cheng and Max, Nelson and Ding, Jinhui and Bethel, E.Wes and Crivelli, Silvia N.},
  ignorenote = {LBNL-51870},
  year = {2005},
  institution = {Lawrence Berkeley National Laboratory},
  address = {Berkeley, CA, USA, 94720}
}
```

2004

Crivelli, S., Kreylos, O., Hamann, B., Max, N., & Bethel, E. W. (2004). ProteinShop: A Tool for Interactive Protein Manipulation and Steering. Journal of Computer Aided Molecular Design (JCAMD), 18(4), 271–285. https://doi.org/10.1023/B:JCAM.0000046822.54719.4f
```
@article{Crivelli:JCAMD:2004,
  author = {Crivelli, Silvia and Kreylos, Oliver and Hamann, Bernd and Max, Nelson and Bethel, E. Wes},
  title = {{ProteinShop: A Tool for Interactive Protein Manipulation and Steering}},
  journal = {Journal of Computer Aided Molecular Design (JCAMD)},
  volume = {18},
  number = {4},
  month = apr,
  year = {2004},
  pages = {271--285},
  ignorenote = {LBNL-53731},
  escholarshipurl = {https://escholarship.org/uc/item/5nz6n91c},
  doi = {10.1023/B:JCAM.0000046822.54719.4f}
}
```
Bowman, I., Shalf, J., Ma, K.-L., & Bethel, E. W. (2004). Performance Modeling for 3D Visualization in a Heterogeneous Computing Environment. Lawrence Berkeley National Laboratory.
```
@techreport{Bowman:LBNL-56977:2004,
  title = {{Performance Modeling for 3D Visualization in a Heterogeneous Computing Environment}},
  author = {Bowman, Ian and Shalf, John and Ma, Kwan-Liu and Bethel, E. Wes},
  ignorenote = {LBNL-56977},
  month = jul,
  year = {2004},
  institution = {Lawrence Berkeley National Laboratory},
  address = {Berkeley, CA, USA, 94720}
}
```
Bethel, E. W., Shalf, J., Cristina Siegerist, K. J., Ma, K.-L., & Hamann, B. (2004). Remote and Distributed High Performance Scientific Visualization – Terabytes to Insights. Lawrence Berkeley National Laboratory.
```
@techreport{LBNL-PUB-912:2004,
  title = {{Remote and Distributed High Performance Scientific Visualization -- Terabytes to Insights.}},
  author = {Bethel, E. Wes and Shalf, John and Cristina Siegerist, Kenneth Joy and Ma, Kwan-Liu and Hamann, Bernd},
  ignorenote = {LBNL-PUB-912},
  month = jul,
  year = {2004},
  institution = {Lawrence Berkeley National Laboratory},
  address = {Berkeley, CA, USA, 94720}
}
```
Shalf, J., Siegerist, C., & Bethel, E. W. (2004). Personal Display Wall. Lawrence Berkeley National Laboratory.
```
@techreport{PersonalDisplayWall:2004,
  title = {{Personal Display Wall}},
  author = {Shalf, John and Siegerist, Cristina and Bethel, E. Wes},
  ignorenote = {LBNL-PUB-894},
  month = jan,
  year = {2004},
  institution = {Lawrence Berkeley National Laboratory},
  address = {Berkeley, CA, USA, 94720}
}
```
Siegerist, C., Shalf, J., & Bethel, E. W. (2004). Visportal: Increasing Scientific Productivity by Simplifying Access to and Use of Remote Computational Resources. Lawrence Berkeley National Laboratory.
```
@techreport{Visportal:2004,
  title = {{Visportal: Increasing Scientific Productivity by Simplifying Access to and Use of Remote Computational Resources}},
  author = {Siegerist, Cristina and Shalf, John and Bethel, E. Wes},
  ignorenote = {LBNL-PUB-893},
  month = jan,
  year = {2004},
  institution = {Lawrence Berkeley National Laboratory},
  address = {Berkeley, CA, USA, 94720}
}
```
Siegerist, C., Shalf, J., & Bethel, E. W. (2004). Interactive Remote and Distributed Visualization of Fusion Simulation Results. Lawrence Berkeley National Laboratory.
```
@techreport{RemoteFusionVis:2004,
  title = {{Interactive Remote and Distributed Visualization of Fusion
                    Simulation Results}},
  author = {Siegerist, Cristina and Shalf, John and Bethel, E. Wes},
  month = jan,
  year = {2004},
  ignorenote = {LBNL-PUB-892},
  institution = {Lawrence Berkeley National Laboratory},
  address = {Berkeley, CA, USA, 94720}
}
```
Bowman, I., Shalf, J., Ma, K.-L., & Bethel, E. W. (2004). Performance Modeling for 3D Visualization in a Heterogeneous Computing Environment. Lawrence Berkeley National Laboratory.
```
@techreport{Bowman:Heterogeneous-TR:2004,
  author = {Bowman, Ian and Shalf, John and Ma, Kwan-Liu and Bethel, E. Wes},
  title = {{Performance Modeling for 3D Visualization in a
                    Heterogeneous Computing Environment}},
  year = {2004},
  ignorenote = {LBNL-56977},
  institution = {Lawrence Berkeley National Laboratory},
  address = {Berkeley, CA, USA, 94720}
}
```

2003

Shalf, J., & Bethel, E. W. (2003). The grid and future visualization system architectures. IEEE Computer Graphics and Applications, 23(2), 6–9. https://doi.org/10.1109/MCG.2003.1185573

@article{Shalf:GridVis:CGA2003,
  author = {Shalf, John and Bethel, E. Wes},
  title = {The grid and future visualization system architectures},
  journal = {{IEEE Computer Graphics and Applications}},
  volume = {23},
  number = {2},
  year = {2003},
  pages = {6--9},
  month = may,
  ignorenote = {LBNL-51723},
  xx_url = {http://vis.lbl.gov/Publications/2002/IEEECGA-VisViewpointsMay2003-LBNL-51723.pdf},
  doi = {10.1109/MCG.2003.1185573}
}

Shalf, J., & Bethel, E. W. (2003). Grid-Distributed Visualizations Using Connectionless Protocols. IEEE Computer Graphics and Applications, 23(2), 51–59. https://doi.org/10.1109/MCG.2003.1185580

@article{Shalf:CactusVisapult:CGA2003,
  author = {Shalf, John and Bethel, E. Wes},
  xx_title = {{Cactus and Visapult: A Case Study of Ultra-High Performance Distributed Visualization Using Connectionless Protocols}},
  title = {{Grid-Distributed Visualizations Using Connectionless Protocols}},
  journal = {{IEEE Computer Graphics and Applications}},
  volume = {23},
  number = {2},
  year = {2003},
  pages = {51--59},
  month = mar,
  doi = {10.1109/MCG.2003.1185580},
  xx_url = {http://www-library.lbl.gov/docs/LBNL/515/64/PDF/LBNL-51564.pdf},
  ignorenote = {LBNL-51564}
}

Jankun-Kelly, T. J., Kreylos, O., Shalf, J., Ma, K.-L., Hamann, B., Joy, K. I., & Bethel, E. W. (2003). Deploying Web-based Visual Exploration Tools on the Grid. IEEE Computer Graphics and Applications, 23(2), 40–49. https://doi.org/10.1109/MCG.2003.1185579
```
@article{Kelly:CGA:2003,
  author = {Jankun-Kelly, T.J. and Kreylos, Oliver and Shalf, John and Ma, Kwan-Liu and Hamann, Bernd and Joy, Kenneth I. and Bethel, E. Wes},
  title = {{Deploying Web-based Visual Exploration Tools on the
                    Grid}},
  journal = {{IEEE Computer Graphics and Applications}},
  volume = {23},
  number = {2},
  year = {2003},
  pages = {40--49},
  month = mar,
  ignorenote = {LBNL-51553},
  doi = {10.1109/MCG.2003.1185579}
}
```
Kreylos, O., Max, N., Hamann, B., Crivelli, S., & Bethel, E. W. (2003). Interactive Protein Manipulation. Proceedings of IEEE Visualization 2003, 581–588. https://doi.org/10.1109/VISUAL.2003.1250423 Best Application Paper Award.
```
@inproceedings{Kreylos:PShop-IEEEVis:2003,
  author = {Kreylos, Oliver and Max, Nelson and Hamann, Bernd and Crivelli, Silvia and Bethel, E. Wes},
  title = {{Interactive Protein Manipulation}},
  booktitle = {Proceedings of IEEE Visualization 2003},
  month = oct,
  year = {2003},
  address = {Seattle, WA},
  pages = {581--588},
  ignorenote = {LBNL-52414, Winner of the Best Application Paper Award},
  note = {Best Application Paper Award},
  doi = {10.1109/VISUAL.2003.1250423}
}
```
Bethel, E. W., Humphreys, G., Paul, B., & Brederson, J. D. (2003). Sort-First, Distributed Memory Parallel Visualization and Rendering. Proceedings of the 2003 IEEE Symposium on Parallel and Large-Data Visualization and Graphics, 41–50. https://doi.org/10.1109/PVGS.2003.1249041
```
@inproceedings{Bethel:PVG:2003,
  author = {Bethel, E. Wes and Humphreys, Greg and Paul, Brian and Brederson, J. Dean},
  title = {{Sort-First, Distributed Memory Parallel Visualization and Rendering}},
  booktitle = {Proceedings of the 2003 IEEE Symposium on Parallel and Large-Data Visualization and Graphics},
  pages = {41--50},
  month = oct,
  year = {2003},
  doi = {10.1109/PVGS.2003.1249041}
}
```
Weber, G., Öhler, M., Kreylos, O., Shalf, J., Bethel, E. W., Hamann, B., & Scheuermann, G. (2003). Parallel Cell Projection Rendering of Adaptive Mesh Refinement Data. IEEE Symposium on Parallel and Large-Data Visualization and Graphics, 51–60. https://doi.org/10.1109/PVGS.2003.1249042
```
@inproceedings{Weber:CellProjection:2003,
  author = {Weber, Gunther and \"{O}hler, Martin and Kreylos, Oliver and Shalf, John and Bethel, E. Wes and Hamann, Bernd and Scheuermann, Gerik},
  title = {{Parallel Cell Projection Rendering of Adaptive Mesh
                    Refinement Data}},
  booktitle = {IEEE Symposium on Parallel and Large-Data Visualization
                    and Graphics},
  year = {2003},
  month = oct,
  pages = {51-60},
  address = {Seattle WA, USA},
  ignorenote = {LBNL-52469},
  doi = {10.1109/PVGS.2003.1249042}
}
```
Bethel, E. W., Siegerist, C., Shalf, J., Shetty, P., Jankun-Kelly, T. J., Kreylos, O., & Ma, K.-L. (2003, June). VisPortal: Deploying Grid-Enabled Visualization Tools through a Web-portal Interface. Wide Area Collaborative Environments. https://escholarship.org/uc/item/6mt7085p
```
@inproceedings{Bethel:VisPortal-WACE:2003,
  author = {Bethel, E. Wes and Siegerist, Cristina and Shalf, John and Shetty, Praveenkumar and Jankun-Kelly, T.J. and Kreylos, Oliver and Ma, Kwan-Liu},
  title = {{VisPortal: Deploying Grid-Enabled Visualization Tools
                    through a Web-portal Interface}},
  booktitle = {Wide Area Collaborative Environments},
  year = {2003},
  month = jun,
  address = {Seattle, WA, USA},
  ignorenote = {LBNL-52940},
  url = {https://escholarship.org/uc/item/6mt7085p}
}
```
Kreylos, O., Bethel, E. W., Ligocki, T. J., & Hamann, B. (2003). Virtual-Reality Based Interactive Exploration of Multiresolution Data. In G. Farin, B. Hamann, & H. Hagen (Eds.), Hierarchical and Geometrical Methods in Scientific Visualization. Mathematics and Visualization. Springer Berlin Heidelberg. https://doi.org/10.1007/978-3-642-55787-3_13
```
@incollection{VR-Multires:Kreylos:2003,
  author = {Kreylos, Oliver and Bethel, E. Wes and Ligocki, Terry J. and Hamann, Bernd},
  year = {2003},
  title = {{Virtual-Reality Based Interactive Exploration of Multiresolution Data}},
  editor = {Farin, G. and Hamann, B. and Hagen, H.},
  booktitle = {Hierarchical and Geometrical Methods in Scientific Visualization. Mathematics and Visualization},
  publisher = {Springer Berlin Heidelberg},
  doi = {10.1007/978-3-642-55787-3_13}
}
```
Siegerist, C., Shetty, P., E. Wes Bethel, T. J. J.-K., Kreylos, O., Ma, K.-L., & Shalf, J. (2003, June). VisPortal: Deploying Grid-enabled Visualization Tools Through a Web-portal Interface. Wide Area Collaborative Environments Workshop.
```
@inproceedings{Visportal:2003,
  title = {{VisPortal: Deploying Grid-enabled Visualization Tools
                    Through a Web-portal Interface}},
  author = {Siegerist, Cristina and Shetty, Praveen and E. Wes Bethel, T.J. Jankun-Kelly and Kreylos, Oliver and Ma, Kwan-Liu and Shalf, John},
  booktitle = {Wide Area Collaborative Environments Workshop},
  address = {Seattle, WA},
  month = jun,
  year = {2003},
  ignorenote = {LBNL-52940}
}
```
Shah, N., Couronne, O., Pennacchio, L., Brudno, M., Batzoglou, S., Bethel, E. W., Rubin, E., Hamann, B., & Dubchak, I. (2003). Phylo-Vista: An Interactive Visualization Tool for Multiple DNA Sequence Alignments. Lawrence Berkeley National Laboratory.
```
@techreport{PhyloVista-TR:2003,
  author = {Shah, Nameeta and Couronne, Olivier and Pennacchio, Len and Brudno, Michael and Batzoglou, Serafim and Bethel, E. Wes and Rubin, Edward and Hamann, Bernd and Dubchak, Inna},
  title = {{Phylo-Vista: An Interactive Visualization Tool for
                    Multiple DNA Sequence Alignments}},
  year = {2003},
  ignorenote = {LBNL-52539},
  institution = {Lawrence Berkeley National Laboratory},
  address = {Berkeley, CA, USA, 94720}
}
```
Bethel, E. W. (2003). Sort-First Distributed Memory Parallel Visualization and Rendering with OpenRM Scene Graph and Chromium. R3vis Corporation.
```
@techreport{OpenRM-Chromium:2003,
  title = {{Sort-First Distributed Memory Parallel Visualization and
                    Rendering with OpenRM Scene Graph and Chromium}},
  author = {Bethel, E. Wes},
  month = jul,
  year = {2003},
  institution = {R3vis Corporation},
  address = {Novato, CA, USA}
}
```

2002

Bethel, E. W., Bastacky, S. J., & Schwartz, K. (2002). Interactive Stereo Electron Microscopy Enhanced with Virtual Reality. In A. Woods, J. Merritt, S. Benton, & M. Bolas (Eds.), Proceedings of SPIE Vol. 4660: Stereoscopic Displays and Virtual Reality Systems IX (pp. 391–400). https://doi.org/10.1117/12.468055
```
@inproceedings{Bethel-SEMVR:SPIE:2002,
  author = {Bethel, E. Wes and Bastacky, S. Jacob and Schwartz, Kenneth},
  title = {{Interactive Stereo Electron Microscopy Enhanced with Virtual Reality}},
  booktitle = {Proceedings of SPIE Vol. 4660: Stereoscopic Displays and Virtual Reality Systems IX},
  year = {2002},
  month = jan,
  pages = {391--400},
  ignorenote = {LBNL-48336},
  editor = {Woods, Andrew and Merritt, John and Benton, Stephen and Bolas, Mark},
  escholarshipurl = {https://escholarship.org/uc/item/6tc5b90z},
  doi = {10.1117/12.468055}
}
```
Bethel, E. W., Frank, R., & Brederson, J. D. (2002). Combining a Multithreaded Scene Graph System with a Tiled Display Environment. In A. Woods, J. Merritt, S. Benton, & M. Bolas (Eds.), Proceedings of SPIE Vol. 4660: Stereoscopic Displays and Virtual Reality Systems IX (pp. 430–436). https://doi.org/10.1117/12.468060
```
@inproceedings{Bethel-tiled:SPIE:2002,
  author = {Bethel, E. Wes and Frank, Randall and Brederson, J. Dean},
  title = {{Combining a Multithreaded Scene Graph System with a Tiled Display Environment}},
  booktitle = {Proceedings of SPIE Vol. 4660: Stereoscopic Displays and Virtual Reality Systems IX},
  year = {2002},
  month = jan,
  pages = {430--436},
  editor = {Woods, Andrew and Merritt, John and Benton, Stephen and Bolas, Mark},
  doi = {10.1117/12.468060}
}
```
Bethel, E. W. (2002). Remote and Distributed Visualization at Berkeley Lab. MICS PI Meeting.
```
@inproceedings{Bethel:MICS-PI:2002,
  author = {Bethel, E. Wes},
  title = {{Remote and Distributed Visualization at Berkeley Lab}},
  booktitle = {MICS PI Meeting},
  address = {Argonne National Lab, Argonne IL, USA},
  mon = jun,
  year = {2002}
}
```
Shalf, J., & Bethel, E. W. (2002). Cactus and Visapult: A Case Study of Ultra-High Performance Distributed Visualization Using Connectionless Protocols. Lawrence Berkeley National Laboratory.
```
@techreport{CactusVisapult:2002,
  title = {{Cactus and Visapult: A Case Study of Ultra-High
                    Performance Distributed Visualization Using
                    Connectionless Protocols.}},
  author = {Shalf, John and Bethel, E. Wes},
  year = {2002},
  ignorenote = {LBNL-50237},
  institution = {Lawrence Berkeley National Laboratory},
  address = {Berkeley, CA, USA, 94720}
}
```
Kreylos, O., Weber, G., Bethel, E. W., Shalf, J., Hamann, B., & Joy, K. (2002). Remote Interactive Direct Volume Rendering of AMR Data. Lawrence Berkeley National Laboratory.
```
@techreport{RemoteAMRVis:2002,
  title = {{Remote Interactive Direct Volume Rendering of AMR Data}},
  author = {Kreylos, Oliver and Weber, Gunther and Bethel, E. Wes and Shalf, John and Hamann, Bernd and Joy, Kenneth},
  year = {2002},
  ignorenote = {LBNL-49954},
  institution = {Lawrence Berkeley National Laboratory},
  address = {Berkeley, CA, USA, 94720}
}
```

2001

Bethel, E. W. (2001). OpenRM Scene Graph Thread Safety and Multistage Rendering. R3vis Corporation.
```
@techreport{OpenRM-Multistage:2001,
  title = {{OpenRM Scene Graph Thread Safety and Multistage
                    Rendering}},
  author = {Bethel, E. Wes},
  year = {2001},
  month = jul,
  institution = {R3vis Corporation},
  address = {Novato, CA, USA}
}
```
Bethel, E. W., & Brederson, J. D. (2001). Hierarchical Parallelism in a Scene Graph. R3vis Corporation.
```
@techreport{OpenRM-Hierarchical:2001,
  title = {{Hierarchical Parallelism in a Scene Graph}},
  author = {Bethel, E. Wes and Brederson, J. Dean},
  year = {2001},
  month = mar,
  institution = {R3vis Corporation},
  address = {Novato, CA, USA}
}
```

2000

Bethel, E. W. (2000). Visualization Dot Com. IEEE Computer Graphics and Applications, 20(3), 17–20. http://vis.lbl.gov/Publications/2000/LBNL-44871-VisapultCGAMay2000.pdf
```
@article{Bethel:Visapult:CGA2000,
  author = {Bethel, E. Wes},
  title = {{Visualization Dot Com}},
  journal = {IEEE Computer Graphics and Applications},
  year = {2000},
  volume = {20},
  number = {3},
  pages = {17--20},
  month = may,
  ignorenote = {LBNL-44871},
  url = {http://vis.lbl.gov/Publications/2000/LBNL-44871-VisapultCGAMay2000.pdf}
}
```

Bethel, W., Tierney, B., lee, J., Gunter, D., & Lau, S. (2000). Using High-speed WANs and Network Data Caches to Enable Remote and Distributed Visualization. Supercomputing ’00: Proceedings of the 2000 ACM/IEEE Conference on Supercomputing (CDROM). https://doi.org/10.1109/SC.2000.10002

@inproceedings{BethelSC00,
  author = {Bethel, Wes and Tierney, Brian and lee, Jason and Gunter, Dan and Lau, Stephen},
  title = {{Using High-speed WANs and Network Data Caches to Enable Remote and Distributed Visualization}},
  booktitle = {Supercomputing '00: Proceedings of the 2000 ACM/IEEE Conference on Supercomputing (CDROM)},
  year = {2000},
  isbn = {0-7803-9802-5},
  location = {Dallas, Texas, United States},
  publisher = {IEEE Computer Society},
  address = {Washington, DC, USA},
  ignorenote = {LBNL-45365},
  doi = {10.1109/SC.2000.10002}
}

Bethel, E. W. (2000, July). Visapult – A Prototype Remote and Distributed Application and Framework. Proceedings of ACM Siggraph 2000 – Applications and Sketches. http://vis.lbl.gov/Publications/2000/LBNL-45215-VisapultSiggraph2000.pdf
```
@inproceedings{Bethel:Visapult:Siggraph00Apps,
  author = {Bethel, E. Wes},
  title = {{Visapult -- A Prototype Remote and Distributed Application and Framework}},
  booktitle = {{Proceedings of ACM Siggraph 2000 -- Applications and Sketches}},
  year = {2000},
  month = jul,
  organization = {{ACM/Siggraph}},
  url = {http://vis.lbl.gov/Publications/2000/LBNL-45215-VisapultSiggraph2000.pdf},
  escholarshipurl = {https://escholarship.org/uc/item/41z9b5wh}
}
```
Bethel, E. W. (2000). Applications Development with OpenRM and CAVElib. R3vis Corporation.
```
@techreport{OpenRM-CAVE:2000,
  title = {{Applications Development with OpenRM and CAVElib}},
  author = {Bethel, E. Wes},
  year = {2000},
  month = sep,
  institution = {R3vis Corporation},
  address = {Novato, CA, USA}
}
```
Bethel, E. W. (2000, January). What is a Scene Graph and Why Should You Care? Tom’s Hardware (Online). \urlhttp://www.tomshardware.co.uk/primer,review-2462.html.
```
@inproceedings{Toms-SceneGraph:2000,
  title = {{What is a Scene Graph and Why Should You Care?}},
  booktitle = {Tom's Hardware (online)},
  author = {Bethel, E. Wes},
  year = {2000},
  month = jan,
  note = {\url{http://www.tomshardware.co.uk/primer,review-2462.html}}
}
```

1999

Bethel, E. W., & Bastacky, S. J. (1999). Measurement of Perceived Objects. Proceedings of IEEE Visualization: Late Breaking Hot Topics, 53–56. https://vis.lbl.gov/archive/Publications/1999/LBNL-43446-VirtualProtractor.pdf
```
@inproceedings{Bethel-SEMVR:IEEEVis:1999,
  author = {Bethel, E. Wes and Bastacky, S. Jacob},
  title = {{Measurement of Perceived Objects}},
  booktitle = {{Proceedings of IEEE Visualization: Late Breaking Hot Topics}},
  year = {1999},
  pages = {53-56},
  month = oct,
  address = {San Francisco, CA, USA},
  ignorenote = {LBNL-43446},
  url = {https://vis.lbl.gov/archive/Publications/1999/LBNL-43446-VirtualProtractor.pdf}
}
```
Bethel, E. W. (1999). RM Scene Graph Technical White Paper. R3vis Corporation.
```
@techreport{RMSG-TR:1999,
  title = {{RM Scene Graph Technical White Paper}},
  author = {Bethel, E. Wes},
  year = {1999},
  month = dec,
  institution = {R3vis Corporation},
  address = {Novato, CA, USA}
}
```

1997

Bethel, E. W., Campbell, K., Lau, N. J. S., & Ligocki, T. (1997). Considerations for a Threaded Haptic Interface for Scientific Visualization and Computing. Lawrence Berkeley National Laboratory.
```
@techreport{HapticVis:1997,
  title = {{Considerations for a Threaded Haptic Interface for
                    Scientific Visualization and Computing}},
  author = {Bethel, E. Wes and Campbell, Kevin and Lau, Nancy Johnston Stephen and Ligocki, Terry},
  year = {1997},
  ignorenote = {LBNL-40079},
  institution = {Lawrence Berkeley National Laboratory},
  address = {Berkeley, CA, USA, 94720}
}
```

1996

Bethel, E. W., Jacobsen, J., Austin, A., Lederer, M., & Little, T. (1996, June). Implementing Virtual Reality Interfaces for the Geosciences. Proceedings of Virtual Reality in the Geosciences. https://www.osti.gov/biblio/273775
```
@inproceedings{Bethel:VR-Geosciences:1996,
  author = {Bethel, E. Wes and Jacobsen, Janet and Austin, Andrei and Lederer, Mark and Little, Todd},
  title = {{Implementing Virtual Reality Interfaces for the
                    Geosciences}},
  booktitle = {Proceedings of Virtual Reality in the Geosciences},
  address = {Halden, Norway},
  year = {1996},
  month = jun,
  ignorenote = {LBNL-38618},
  url = {https://www.osti.gov/biblio/273775}
}
```

1995

Jacobsen, J., Bethel, E. W., Datta-Gupta, A., & Holland, P. (1995). Virtual Reservoir Development a Reality on Prototype System. American Oil & Gas Reporter, 38(12), 78–86.
```
@article{Jacobsen:OilGasReporter:1995,
  author = {Jacobsen, Janet and Bethel, E. Wes and Datta-Gupta, Akhil and Holland, Preston},
  title = {{Virtual Reservoir Development a Reality on Prototype
                    System}},
  journal = {American Oil \& Gas Reporter},
  volume = {38},
  number = {12},
  pages = {78--86},
  year = {1995}
}
```
Bethel, E. W. (1995, September). Virtual Reality and Scientific Visualization. EPA Visualization Conference.
```
@inproceedings{Bethel:EPA:1995,
  author = {Bethel, E. Wes},
  title = {{Virtual Reality and Scientific Visualization}},
  booktitle = {EPA Visualization Conference},
  year = {1995},
  month = sep,
  address = {Research Triangle Park NC, USA}
}
```
Bethel, E. W. (1995). Modular Virtual Reality Visualization Tools. Proceedings of the International Advanced Visual Systems User and Developer Conference (AVS95), 245–254.
```
@inproceedings{Bethel:VRModules-AVS:1995,
  author = {Bethel, E. Wes},
  title = {{Modular Virtual Reality Visualization Tools}},
  booktitle = {Proceedings of the International Advanced Visual
                    Systems User and Developer Conference (AVS95)},
  year = {1995},
  month = apr,
  address = {Boston, MA, USA},
  ignorenote = {LBNL-36693},
  pages = {245--254}
}
```
Horsman, J., & Bethel, E. W. (1995). Methods of Constructing a 3D Geological Model from Scatter Data. Proceedings of the International Advanced Visual Systems User and Developer Conference (AVS95), 395–404.
```
@inproceedings{Horsman:3DScat-AVS:1995,
  author = {Horsman, Jennifer and Bethel, E. Wes},
  title = {{Methods of Constructing a 3D Geological Model from
                    Scatter Data}},
  booktitle = {Proceedings of the International Advanced Visual
                    Systems User and Developer Conference (AVS95)},
  year = {1995},
  month = apr,
  address = {Boston, MA, USA},
  pages = {395-404},
  escholarshipurl = {https://escholarship.org/uc/item/6203n3dz}
}
```
Jacobsen, J., Bethel, E. W., Datta-Gupta, A., & Holland, P. (1995). Petroleum Reservoir Simulation in a Virtual Environment. Proceedings of the 13th Symposium on Reservoir Simulation (SPE). https://doi.org/10.2118/29118-MS
```
@inproceedings{Jacobsen:SPE:1995,
  author = {Jacobsen, Janet and Bethel, E. Wes and Datta-Gupta, Akhil and Holland, Preston},
  title = {{Petroleum Reservoir Simulation in a Virtual
                    Environment}},
  booktitle = {Proceedings of the 13th Symposium on Reservoir
                    Simulation (SPE)},
  year = {1995},
  address = {San Antonio TX, USA},
  doi = {10.2118/29118-MS}
}
```

1994

Bethel, E. W. (1994). Chemical Flooding in a Virtual Environment – A Survivor’s Guide to VR Development. Proceedings of the International Advanced Visual Systems User and Developer Conference (AVS94), 299–309. https://www.osti.gov/biblio/10150939
```
@inproceedings{Bethel:VirtualFlooding:1994,
  author = {Bethel, E. Wes},
  title = {{Chemical Flooding in a Virtual Environment -- A
                    Survivor's Guide to VR Development}},
  booktitle = {Proceedings of the International Advanced Visual
                    Systems User and Developer Conference (AVS94)},
  year = {1994},
  month = may,
  pages = {299-309},
  ignorenote = {LBNL-35262},
  address = {Boston MA, USA},
  url = {https://www.osti.gov/biblio/10150939}
}
```
Bethel, E. W., Jacobsen, J., & Holland, P. (1994). Site Remediation in a Virtual Environment. In R. J. Moorhead, D. E. Silver, & S. P. Uselton (Eds.), Visual Data Exploration and Analysis, Proceedings of SPIE 2178 (pp. 78–87). https://doi.org/10.1117/12.172079
```
@inproceedings{Bethel:SPIE:1994,
  author = {Bethel, E. Wes and Jacobsen, Janet and Holland, Preston},
  title = {{Site Remediation in a Virtual Environment}},
  booktitle = {Visual Data Exploration and Analysis, Proceedings of SPIE 2178},
  editor = {Moorhead, Robert J. and Silver, Deborah E. and Uselton, Samuel P.},
  pages = {78--87},
  year = {1994},
  month = jan,
  address = {San Jose CA, USA},
  ignorenote = {LBNL-34865},
  doi = {10.1117/12.172079}
}
```

1993

Bethel, E. W. (1993). Illustrated Techniques. In P. R. Keller & M. M. Keller (Eds.), Visual Cues: Practical Data Visualization (pp. 39–42). IEEE Computer Society Press.
```
@incollection{VisualCues:1993,
  author = {Bethel, E. Wes},
  editor = {Keller, Peter R. and Keller, Mary M.},
  title = {Illustrated Techniques},
  booktitle = {{Visual Cues: Practical Data Visualization}},
  year = {1993},
  publisher = {IEEE Computer Society Press},
  pages = {39-42}
}
```
Bethel, E. W. (1993). Analytic Rendering of Curvilinear Volume Data. Lawrence Berkeley National Laboratory.
```
@techreport{Bethel:BezierVolumes:1993,
  author = {Bethel, E. Wes},
  title = {{Analytic Rendering of Curvilinear Volume Data}},
  institution = {{Lawrence Berkeley National Laboratory}},
  address = {Berkeley, CA, USA, 94720},
  year = {1993},
  ignorenote = {LBNL-33808}
}
```

1992

Bethel, E. W. (1992). Interpolating Gridded Data from Scattered Data in AVS. AVS Network News, 13–16.
```
@inproceedings{Scat2Grid-AVS:1992,
  title = {{Interpolating Gridded Data from Scattered Data in AVS}},
  author = {Bethel, E. Wes},
  booktitle = {AVS Network News},
  pages = {13--16},
  year = {1992}
}
```

1991

Bethel, E. W., Johnston, N., & Holmes, H. (1991, March). Visualization Using a Data Flow-based Paradigm. Conference on Computing in High Energy Physics (CHEP). https://escholarship.org/uc/item/4f67b54d
```
@inproceedings{Bethel:CHEP:1991,
  author = {Bethel, E. Wes and Johnston, Nancy and Holmes, Harvard},
  title = {{Visualization Using a Data Flow-based Paradigm}},
  booktitle = {Conference on Computing in High Energy Physics (CHEP)},
  address = {Tsukuba, Japan},
  year = {1991},
  month = mar,
  url = {https://escholarship.org/uc/item/4f67b54d}
}
```

1989

Bethel, E. W., & Uselton, S. P. (1989). Shape Distortion in Computer-Assisted Keyframe Animation. In N. Magnenat-Thalmann & D. Thalmann (Eds.), State-of-the-art in Computer Animation (pp. 215–224). Spring-Verlag. https://doi.org/10.1007/978-4-431-68293-6_17
```
@inproceedings{Bethel:ShapeMorphing:1989,
  author = {Bethel, E. Wes and Uselton, Samuel P.},
  title = {{Shape Distortion in Computer-Assisted Keyframe
                    Animation}},
  booktitle = {State-of-the-art in Computer Animation},
  editor = {Magnenat-Thalmann, Nadia and Thalmann, Daniel},
  year = {1989},
  month = jun,
  publisher = {Spring-Verlag},
  address = {Geneva, Switzerland},
  pages = {215-224},
  doi = {10.1007/978-4-431-68293-6_17}
}
```